cluster # 6614

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6614 cluster # 6614 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6614#0 length = 266 sequences # 1

consensus_6614#1 length = 224 sequences # 2
consensus_6614#2 length = 88 sequences # 1

consensusID : consensus_6614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTCAAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAACAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTTTCTTTCTTATGCATTTATTTATTTCTTATGCN]

[+] EMBL AA751760             [CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTCAAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAACAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTTTCTTTCTTATGCATTTATTTATTTCTTATGCN]




>consensus_6614#0
CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTA
CCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTCAAANCA
AAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAACAACAT
GATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTTTCTTTC
TTATGCATTTATTTATTTCTTATGCN

consensusID : consensus_6614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 224
fasta sequence

                              [GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCG-GTGAATKCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA]

[+] EMBL AA751249             [GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCG GTGAATKCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA]
[+] EMBL AA750854             [                              TCACTCATTTCACCCAGTTGCTACCATCCTCAATTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGTGTGAATCCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCT CTGAGAACAACATa                                        ]




>consensus_6614#1
GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCT
CAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGAATKCATTGTCAAA
GCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAACAA
CATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA

consensusID : consensus_6614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 88
fasta sequence

                              [CCAGTTNCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGGTACGGAATNCATTGTCAAGAGAGAGCTATGGGAAAN]

[+] EMBL AA749646             [CCAGTTNCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGGTACGGAATNCATTGTCAAGAGAGAGCTATGGGAAAN]




>consensus_6614#2
CCAGTTNCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGGTACGGAAT
NCATTGTCAAGAGAGAGCTATGGGAAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6614#1      GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCT 60
consensus_6614#2      -------------------------------------------CCAGTTNCTACCATCCT 17
consensus_6614#0      ------CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCT 54
                                                                 ****** **********

consensus_6614#1      CAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGT---GAATKCATTGTC 117
consensus_6614#2      CAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGG-TACG--------GAATNCATTGTC 68
consensus_6614#0      CAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTC 114
                      ************************ ********** ***         **** *******

consensus_6614#1      AAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAA 177
consensus_6614#2      AAG--AGAGAGCTATG--GGAAAN------------------------------------ 88
consensus_6614#0      AAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAA 174
                      **   * * * *****  *****                                     

consensus_6614#1      CAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA------------- 224
consensus_6614#2      ------------------------------------------------------------
consensus_6614#0      CAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTT 234
                                                                                  

consensus_6614#1      --------------------------------
consensus_6614#2      --------------------------------
consensus_6614#0      TCTTTCTTATGCATTTATTTATTTCTTATGCN 266