These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTCAAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAACAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTTTCTTTCTTATGCATTTATTTATTTCTTATGCN] [+] EMBL AA751760 [CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTCAAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAACAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTTTCTTTCTTATGCATTTATTTATTTCTTATGCN] consensusID : consensus_6614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 224 fasta sequence [GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCG-GTGAATKCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA] [+] EMBL AA751249 [GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCG GTGAATKCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA] [+] EMBL AA750854 [ TCACTCATTTCACCCAGTTGCTACCATCCTCAATTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGTGTGAATCCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCT CTGAGAACAACATa ] consensusID : consensus_6614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [CCAGTTNCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGGTACGGAATNCATTGTCAAGAGAGAGCTATGGGAAAN] [+] EMBL AA749646 [CCAGTTNCTACCATCCTCAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGGTACGGAATNCATTGTCAAGAGAGAGCTATGGGAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6614#1 GCACCGRAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCT 60 consensus_6614#2 -------------------------------------------CCAGTTNCTACCATCCT 17 consensus_6614#0 ------CAAAGCTCAAAATGAGGACAAGTTTCACTCATTTCACCCAGTTGCTACCATCCT 54 ****** ********** consensus_6614#1 CAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGT---GAATKCATTGTC 117 consensus_6614#2 CAGTTACCTCACCAAGGCTCCTCTGGTTCCACCGG-TACG--------GAATNCATTGTC 68 consensus_6614#0 CAGTTACCTCACCAAGGCTCCTCTTGTTCCACCGGGTACACCGGTGGTGAATGCATTGTC 114 ************************ ********** *** **** ******* consensus_6614#1 AAAGCAGAGAGCTATGCTGGAAAACATCATGAGGGCTTGTGTTGGATTGGCTCCTGAGAA 177 consensus_6614#2 AAG--AGAGAGCTATG--GGAAAN------------------------------------ 88 consensus_6614#0 AAANCAAAAANCTATGCTGGAAAACATCATGANGGCTTGTGNTGGATTGGCTCCTGAAAA 174 ** * * * ***** ***** consensus_6614#1 CAACATGATCCTCGAGTACAAGTGAATGAAGAACTAGTGGGTGGGAA------------- 224 consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 CAACATGATCCTCNAGNNCAAGTNAATGAAAAACTAGTGGGCGGGAATATTACTGCTCTT 234 consensus_6614#1 -------------------------------- consensus_6614#2 -------------------------------- consensus_6614#0 TCTTTCTTATGCATTTATTTATTTCTTATGCN 266 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||