These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTCCAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCGTGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACAATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGATAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGGATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGGATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGCCAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCGCGCTGTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCG-CCGCCCTCTCGCCGAAGGTCAACCCAATG-AGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAA-CCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAA] [+] EMBL AK059635 [ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTCCAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCGTGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACAATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGATAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGGATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGGATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGCCAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCGCGCTGTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCG CCGCCCTCTCGCCGAAGGTCAACCCAATG AGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAA CCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATT ] [-] EMBL CF307652 [ CCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGNCCG CCTCTCGCCGAAGGTCAACCCAATGAAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAA] consensusID : consensus_6617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CGAGCTCGTSCATTCGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAGGTGTAATATGAATATGWTTCGWTTCGTTTA] [+] EMBL BE229598 [CGAGCTCGTSCATTCGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAGGTGTAATATGAATATGWTTCGWTTCGTTTA] consensusID : consensus_6617#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TGGACTGAAGGAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTTAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCCG] [+] EMBL CF307653 [TGGACTGAAGGAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTTAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6617#0 ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTC 60 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 CAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCG 120 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 TGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACA 180 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 ATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGA 240 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 TAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGG 300 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 ATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGG 360 consensus_6617#1 ------------------------------------------------------------ consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 ATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGC 420 consensus_6617#1 ----------------------------------------------------CGAGCTCG 8 consensus_6617#2 ------------------------------------------------------------ consensus_6617#0 CAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCG-CGCTGTCAAGAAGCAG 479 consensus_6617#1 TSCATT----CGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAG 64 consensus_6617#2 --------------------------------------------------TGGACTGAAG 10 * ** consensus_6617#0 CCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAAC 539 consensus_6617#1 CCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAAC 124 consensus_6617#2 GAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAAC 70 * ** *********************************** *************** consensus_6617#0 GACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGT 599 consensus_6617#1 GACGTGCACCTCGCCGCCCTCTCGCCGAAG-TCAACCCAATGAGCCCTAACTACATCCGT 183 consensus_6617#2 GACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGT 130 ****************************** ***************************** consensus_6617#0 GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTG 659 consensus_6617#1 GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTG 243 consensus_6617#2 GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTG 190 **************************************************** ******* consensus_6617#0 TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 719 consensus_6617#1 TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 303 consensus_6617#2 TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 250 ************************************************************ consensus_6617#0 GTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTA 779 consensus_6617#1 GTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTA 363 consensus_6617#2 GTTCTGTCTGTAAATTTGCTAGCT-TAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTA 309 ******** *************** *** ************ ****************** consensus_6617#0 ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAG 839 consensus_6617#1 ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAG 423 consensus_6617#2 ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAG 369 ****************************************************** ***** consensus_6617#0 GTG-AATATGAATATGATTCGATTCGTTTAAAAAAAAA---------------------- 876 consensus_6617#1 GTGTAATATGAATATGWTTCGWTTCGTTTA------------------------------ 453 consensus_6617#2 GTG-AATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCC 428 *** ************ **** ******** consensus_6617#0 - consensus_6617#1 - consensus_6617#2 G 429 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||