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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGACGCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCCGTCGGCGAAGAAGGGGGTCTTCATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATTTGCAAAGACCTACAAGAGAGACCAGGAAAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTACTCCTCCAACTCCTCCACCCAAAAGAGTGCTTCCACCAATACCCGAAGACGAACAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGCGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCCTGCTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGACATGTTCTGGATTTTACACTTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTATGGTGTCAAGTAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA]
[+] EMBL AK111319 [GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGACGCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCCGTCGGCGAAGAAGGGGGTCTTCATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATTTGCAAAGACCTACAAGAGAGACCAGGAAAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTACTCCTCCAACTCCTCCACCCAAAAGAGTGCTTCCACCAATACCCGAAGACGAACAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGCGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCCTGCTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGACATGTTCTGGATTTTACACTTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTATGGTGTCAAGTAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA]
[+] EMBL AA749727 [ GCTTCCACCAATACCCGAAGACGAACAACGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACGCAATGCTGCTGAGAAGAACAAGATCAACGAAGAGAAGGTGCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTTCCCCGTTTGTGATTAGCATTTCACTGGCTGCCCTGCT ]
consensusID : consensus_6618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[CCCCAGTCCGCCCCCGCCGCGTTGCCGACCCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTTCATGCCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATTGTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCTGCTGCCAGCTCCAGTTCAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCAGACGAGCAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACCAATGCCGCTGAGAAGAGCAAGATCAACGAAGAGAAGGCTCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTCCCTCGTTTGTGATTGTTATCACTGGCTGCCCTGCTGGGCCTTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGACGTGTTCTGGATTTTGCACTTGTCTCTTGTTAGTTGCAGAAATGATGACCCTTTGTATGTTGTGTCCAAAAAAAAAA]
[+] EMBL BI799637 [CCCCAGTCCGCCCCCGCCGCGTTGCCGACCCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTTCATGCCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATTGTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCTGCTGCCAGCTCCAGTTCAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCAGACGAGCAGCGCCAGGTCTACAAGTGGATGCTGGAAGAGAAGCGGAAGATCAAGCCACCAATGCCGCTGAGAAGAGCAAGATCAACGAAGAGAAGGCTCTTCTCAAGGAGTTCATCAGGGCAGAGTCTCTCCCTCGTTTGTGATTGTTATCACTGGCTGCCCTGCTGGGCCTTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGACGTGTTCTGGATTTTGCACTTGTCTCTTGTTAGTTGCAGAAATGATGACCCTTTGTATGTTGTGTCCAAAAAAAAAA]
consensusID : consensus_6618#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[AAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCAAAAGAGTACTTCCACCAATACCCCAAGACGAGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACCGCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGTTCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACCTGGCTGCCCCTGCTGGGCCCTTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATTTTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAAAAAAAAA]
[+] EMBL BI798140 [AAAGAAGAACGCTCAGACTGCTGCTGCTGCAGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCCAGCTGCTGAGACTGTAGATCCTGCTCCTCCAACTCCTCCACCCAAAAGAGTACTTCCACCAATACCCCAAGACGAGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACCGCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGTTCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACCTGGCTGCCCCTGCTGGGCCCTTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATTTTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6618#1 -----------------------------CCCCAGTCCGC-CCCCGCCGCGTTG-CCGAC 29
consensus_6618#2 ------------------------------------------------------------
consensus_6618#0 GCCGCGCCGCCCCCCCGTCGACCGCGATCTTCCAGTCCGCACCCCGCCGCGATGGCCGAC 60
consensus_6618#1 CCCGCAACCCGGACCCCGCTGTCCCCGCCGGAGGCGCCCGTCGGCGAAGAAGGGGTTCTT 89
consensus_6618#2 ------------------------------------------------------------
consensus_6618#0 GCCGGCAAGCCCGACCCCGCGTCGCCGCCGGAGGCGCC-GTCGGCGAAGAAGGGGGTCTT 119
consensus_6618#1 CATGC-CCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTATGTATT 148
consensus_6618#2 ------------------------------------------------------------
consensus_6618#0 CATGCGCCGCATCTTCCCGTTCCTCCTCGCCGCCAACATCTTCATCGGAGTTTACGTATT 179
consensus_6618#1 GTGCAAAGACCCTACCAAGAGAGACCCACGGAAAAGAAGAACCGCTCCAGACCTGCTGCT 208
consensus_6618#2 --------------------------------AAAGAAGAAC-GCTC-AGAC-TGCTGCT 25
consensus_6618#0 -TGCAAAGAC----CTACAAGAGAGACCAGGAAAAGAAGAAC-GCTC-AGAC-TGCTGCT 231
********** **** **** *******
consensus_6618#1 GCTGCCAGCTCCAGTT-CAGCATTGTCATCCCCAGCTGCCCCCAGCTGCTGAGACTGTAG 267
consensus_6618#2 GCTGC-AGCTGCAGTTGCAGCATTGTCATCCCCAGCTGCCCC-AGCTGCTGAGACTGTAG 83
consensus_6618#0 GCTGC-AGCTGCAGTTGTAGCATTGTCATCCCCAGCTGCCCC-AGCTGCTGAGACTGTAG 289
***** **** ***** ************************ *****************
consensus_6618#1 ATCCTGCTCCTCCAACTCCTCCACCCCACAAAGAGTACTTCCACCCAATACCCCA-GACG 326
consensus_6618#2 ATCCTGCTCCTCCAACTCCTCCACCCAA--AAGAGTACTTCCACC-AATACCCCAAGACG 140
consensus_6618#0 ATCCTACTCCTCCAACTCCTCCACCCAA--AAGAGTGCTTCCACC-AATACCCGAAGACG 346
***** ******************** * ****** ******** ******* * ****
consensus_6618#1 AGCAGCGCCA-GGTCTAC-AAGTGGATGC-TGGAAGAGAAGC-GGAAGAT-CAAGCCACC 381
consensus_6618#2 AGCAGCGCCACGGTCTACCAAGTGGATGCCTGGAAGAGAAGCCGGAAGATTCAAGCCACC 200
consensus_6618#0 AACAGCGCCA-GGTCTAC-AAGTGGATGC-TGGAAGAGAAGC-GGAAGAT-CAAGCCACG 401
* ******** ******* ********** ************ ******* ********
consensus_6618#1 --AATGCC--GCTGAGAAGAGC-AAGATCAA--CGAAGAGAAGGCTCTTCTC-AAGGAGT 433
consensus_6618#2 GCAATGCCCGCCTGAGAAGAGCCAAGATTCAACCGAAGAGAAGGCTCTTCTCCAAGGAGT 260
consensus_6618#0 -CAATGCT--GCTGAGAAGAAC-AAGATCAA--CGAAGAGAAGGCGCTTCTC-AAGGAGT 454
***** ********* * ***** * ************ ****** *******
consensus_6618#1 TCATCA---GGGCAGA-GTCTCTCCCTCGTTTGTGATTGTTATCAC--TGGCTGCCC-TG 486
consensus_6618#2 TCACTCCACGGGCAGACGTCTCTCCCTCGTTTGTGATTGTTATCACC-TGGCTGCCCCTG 319
consensus_6618#0 TCATCA---GGGCAGA-GTCTCTTCCCCGTTTGTGATTAGCATCTCACTGGCTGCCC-TG 509
*** ******* ****** ** *********** *** * ********* **
consensus_6618#1 CTGGGCC----TTGGTTTTTCGCTTTGCCCCAGATCCACGTGAGGAC-GTGTTCTGGATT 541
consensus_6618#2 CTGGGCCC---TTGGTTTTTCGTTTGCCCGCAGATCCACGTGAGGACCGTGTTCTGGATT 376
consensus_6618#0 CTGGCCTTGTTTTTTTTTTTCTTTTGCCTGCTGTTCCATGGAAGGAC-ATGTTCTGGATT 568
**** * ** ****** ** * * * **** * ***** ***********
consensus_6618#1 TTGCAC-TTGTCTCTTGTTAGTTG-CAGAAATGATGACCCTTTGTA--TGTTGTGTCCAA 597
consensus_6618#2 TTGCACCTTGTCTCTTGTTAGTTGGCAGAAATGATGACACTTTGTACCTCTCGTGTCAAA 436
consensus_6618#0 TTACAC-TTGTCTCTTGTTTGTTGGCAGAAACGGTAGCATTTTGTA----TGGTGTCAAG 623
** *** ************ **** ****** * * * ****** * ***** *
consensus_6618#1 AAAAAAAA--------------------------------------------------- 605
consensus_6618#2 AAAAAAA---------------------------------------------------- 443
consensus_6618#0 TAATCATTTGTTACCCAAAATACTGAGTCAAGTGGCTCCAGTTTCAGGGAACTCTGGCA 682
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||