These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1455 fasta sequence [TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCAAACTT] [+] EMBL AK064407 [TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTCCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCAAACTT] [+] EMBL AK102471 [ CCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCA ] [+] EMBL AK073407 [ CTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCA ] consensusID : consensus_6619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AGGAGGCGAGACCTAATTTCCCAAAGAAAAAAAAAGAAAAACAAAATCCCATCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG] [+] EMBL BP184607 [AGGAGGCGAGACCTAATTTCCCAAAGAAAAAAAAAGAAAAACAAAATCCCATCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6619#0 TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCG 60 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 CCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCT 120 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 ACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCT 180 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 GCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCC 240 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 CCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCG 300 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 CCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCG 360 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 ACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGA 420 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 TGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCG 480 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 ACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCC 540 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 AGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCG 600 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 CCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCG 660 consensus_6619#1 --------------------AGGAGGCGAGACCT--AATTTCCCAAAGAAAAAAAAAGAA 38 * * * *** * * ** ** * * consensus_6619#0 AGA-ACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTC 719 consensus_6619#1 AAACAAAATCCCATCTCCCACCGC-CGCCGCAGCCCACCA--CCAGCCGCCGCCTCGG-C 94 * * * * ** * * * ** ** ****** * * *** * ** * ** ** * consensus_6619#0 CCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTC 779 consensus_6619#1 CGCGAGATCGCCG--GCCGCCGCCATGTCGAATCCGGCCGCCTACTACGC---CGCCGTC 149 * *** *** ** *** ******* **** * * ** ******* consensus_6619#0 TGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTAC 839 consensus_6619#1 TGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTAC 209 ************************************************************ consensus_6619#0 CACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTT 899 consensus_6619#1 CACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTT 269 ************************************************************ consensus_6619#0 GAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACT 959 consensus_6619#1 GAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACT 329 ************************************************************ consensus_6619#0 GCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAG 1019 consensus_6619#1 GCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG--------- 380 *************************************************** consensus_6619#0 AGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTT 1079 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 AGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGT 1139 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 GGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTG 1199 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 GAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACT 1259 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 TATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAA 1319 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 TTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGA 1379 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 GGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCA 1439 consensus_6619#1 ------------------------------------------------------------ consensus_6619#0 TCAAAGTACCAAACTT 1455 consensus_6619#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||