cluster # 6621

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Oryza sativa
cluster # 6621 cluster # 6621 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6621#0 length = 1050 sequences # 2

consensus_6621#1 length = 240 sequences # 1
consensus_6621#2 length = 224 sequences # 1

consensusID : consensus_6621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1050
fasta sequence

                              [NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCGAGTTTTTTTTTTTGTTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGT-AAAAAAAAAAAAAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCGGCGTCACTTGGCGTCGGCGGCGGCGGCGGCATCGGCGGCGCGCTGGGCGTCGATCTTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAGGGGTATGCGGAGGCTCTGCGCGGATAGACATGGTTTGGGCTGATGGTTCAGTAGCGGGGCATAGGACTAAGTGGCCGTCTGTACCCTCTCGTCTCGCGGACAGGTTTGAGATTCAGTATTAGTTTTTGGTGGCATGTCGTTAGGTGGCGCTGTGAGGTGGGGTTTGTGATGGTGGGTTACCCGCACCTTCTACTCACCATATTAAAACGGCGCGCCCTGAAGTCGTCTTGCCTGTCAGTCCGCGAGTGTGGCGGGTGTGGATGCAGCCTGCGTAGGTGCGTTGTATATTNAGTTCCACGTGCAAAACAAG]

[+] EMBL BE040050             [NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCGAGTTTTTTTTTTTGTTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGT AAAAAAAAAAAAAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCGGCGTCACTTGGCGTCGGCGGCGGCGGCGGCATCGGCGGCGCGCTGGGCGTCGATCTTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAGGGGTATGCGGAGGCTCTGCGCGGATAGACATGGTTTGGGCTGATGGTTCAGTAGCGGGGCATAGGACTAAGTGGCCGTCTGTACCCTCTCGTCTCGCGGACAGGTTTGAGATTCAGTATTAGTTTTTGGTGGCATGTCGTTAGGTGGCGCTGTGAGGTGGGGTTTGTGATGGTGGGTTACCCGCACCTTCTACTCACCATATTAAAACGGCGCGCCCTGAAGTCGTCTTGCCTGTCAGTCCGCGAGTGTGGCGGGTGTGGATGCAGCCTGCGTAGGTGCGTTGTATATTNAGTTCCACGTGCAAAACAAG]
[+] EMBL CA757249             [                                                                TTTTTTTTTTTTTTTTTTTTAGAGGGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAAAGAGGTACGTTGCCACCTGTGACACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGTAAAAAAAAAAAAAAACAAGCCCGATCCGATCCAACGGTTGCGATGACGTGGCCGGCGTCACTTGGCGTCGGCGGCGGCGGGGGCATCGGCGGCGCGCTGGGCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_6621#0
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCT
CGAGTTTTTTTTTTTGTTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAG
CAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTA
CACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGTAAAAAAAAAAA
AAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCGGCGTCACTTGGCGTCGGC
GGCGGCGGCGGCATCGGCGGCGCGCTGGGCGTCGATCTTGGCGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTGTGAGGGGTATGCGGAGGCTCTGCGCGGATAGACATGGTTTGGGC
TGATGGTTCAGTAGCGGGGCATAGGACTAAGTGGCCGTCTGTACCCTCTCGTCTCGCGGA
CAGGTTTGAGATTCAGTATTAGTTTTTGGTGGCATGTCGTTAGGTGGCGCTGTGAGGTGG
GGTTTGTGATGGTGGGTTACCCGCACCTTCTACTCACCATATTAAAACGGCGCGCCCTGA
AGTCGTCTTGCCTGTCAGTCCGCGAGTGTGGCGGGTGTGGATGCAGCCTGCGTAGGTGCG
TTGTATATTNAGTTCCACGTGCAAAACAAG

consensusID : consensus_6621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [TTTTTACAAATAAATGACGTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTACACTGTACACCGACACCTCGACACACACTGGACACGGTACACGTGAAGAGTAAAAAAAAAAAAAAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCTGTGCTGTCACTTG]

[-] EMBL BI797800             [TTTTTACAAATAAATGACGTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTACACTGTACACCGACACCTCGACACACACTGGACACGGTACACGTGAAGAGTAAAAAAAAAAAAAAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCTGTGCTGTCACTTG]




>consensus_6621#1
TTTTTACAAATAAATGACGTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAA
AGCAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACG
TACACTGTACACCGACACCTCGACACACACTGGACACGGTACACGTGAAGAGTAAAAAAA
AAAAAAAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCTGTGCTGTCACTTG

consensusID : consensus_6621#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTACGAGAGAGGTACATTGCCACCTGTGATACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGTAAAAAAACTAGCCGATCGATGCACGTGCGATGACTGGCGCTGCACTGCTGCGCTGCGCTGCGCATCGCGTCAGCTGGCTCGATCTGCGCATGAGCGCT]

[+] EMBL AA749795             [TTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTACGAGAGAGGTACATTGCCACCTGTGATACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGTAAAAAAACTAGCCGATCGATGCACGTGCGATGACTGGCGCTGCACTGCTGCGCTGCGCTGCGCATCGCGTCAGCTGGCTCGATCTGCGCATGAGCGCT]




>consensus_6621#2
TTTATTTCCATTCAAAGCAGAGTAGTCTCCAGTTTGATAAGCGTACGAGAGAGGTACATT
GCCACCTGTGATACGTACACGTACACCGACACCTCGACACACACGGACACGGTACACGTG
AAGAGTAAAAAAACTAGCCGATCGATGCACGTGCGATGACTGGCGCTGCACTGCTGCGCT
GCGCTGCGCATCGCGTCAGCTGGCTCGATCTGCGCATGAGCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCT 60
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      CGAGTTTTTTTTTTTGTTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAG 120
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      CAGAGTAGTCTCCAGTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTA 180
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      CACGTACACCGACACCTCGACACACACGGACACGGTACACGTGAAGAGTAAAAAAAAAAA 240
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      AAACAAGCCCGATCCGATGCAACGGTTGCGATGACGTGGCCGGCGTCACTTGGCGTCGGC 300
                                                                                  

consensus_6621#1      --------------------------------------------TTTTTACAAATAAATG 16
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      GGCGGCGGCGGCATCGGCGGCGCGCTGGGCGTCGATCTTGGCGGNNNNNNNNNNNNNNNN 360
                                                                                  

consensus_6621#1      ACGTTTTTTTAGAGTGGATAGAAAATCATTTTATTTCCATTCAAAGCAGAGTAGTCTCCA 76
consensus_6621#2      -----------------------------TTTATTTCCATTCAAAGCAGAGTAGTCTCCA 31
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 420
                                                                                  

consensus_6621#1      GTTTGATAAGCGTAGCAGAGAGGTACGTTGCCACCTGTGACACGTACACTGTACACCGAC 136
consensus_6621#2      GTTTGATAAGCGTACGAGAGAGGTACATTGCCACCTGTGATACGTACAC-GTACACCGAC 90
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 480
                                                                                  

consensus_6621#1      ACCTCGACACACACTGGACACGGTACACGTGAAGAGTAAAAAAA------AAAAAAAACA 190
consensus_6621#2      ACCTCGACACACAC-GGACACGGTACACGTGAAGAGTAAAAAAACTAGCCGATCGATGCA 149
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 540
                                                                                  

consensus_6621#1      AGCCCGAT--CCGATGC--AACGGTTGCGATGACGTGGCCTGTGCTGTCACTTG------ 240
consensus_6621#2      CGTGCGATGACTGGCGCTGCACTGCTGCGCTG-CGCTGCGCATCGCGTCAGCTGGCTCGA 208
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 600
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      TCTGCGCATGAGCGCT-------------------------------------------- 224
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 660
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 720
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      NNNNNNNNNNNNNGTGTGAGGGGTATGCGGAGGCTCTGCGCGGATAGACATGGTTTGGGC 780
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      TGATGGTTCAGTAGCGGGGCATAGGACTAAGTGGCCGTCTGTACCCTCTCGTCTCGCGGA 840
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      CAGGTTTGAGATTCAGTATTAGTTTTTGGTGGCATGTCGTTAGGTGGCGCTGTGAGGTGG 900
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      GGTTTGTGATGGTGGGTTACCCGCACCTTCTACTCACCATATTAAAACGGCGCGCCCTGA 960
                                                                                  

consensus_6621#1      ------------------------------------------------------------
consensus_6621#2      ------------------------------------------------------------
consensus_6621#0      AGTCGTCTTGCCTGTCAGTCCGCGAGTGTGGCGGGTGTGGATGCAGCCTGCGTAGGTGCG 1020
                                                                                  

consensus_6621#1      ------------------------------
consensus_6621#2      ------------------------------
consensus_6621#0      TTGTATATTNAGTTCCACGTGCAAAACAAG 1050