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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1397 fasta sequence
[ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACCAGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAGGNGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCAT--GGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT]
[+] EMBL CA765493 [ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACCAGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAGGNG ]
[+] EMBL AK070076 [ TGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCAT GGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT]
[+] EMBL AA749879 [ GTGCCTCATGGGGAACAAAGCTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGACTGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGG A C TTTTG AAACATGCC GGAGAAAAcatg ]
consensusID : consensus_6628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1207 fasta sequence
[TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT]
[+] EMBL AK058386 [TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6628#0 ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACC 60
consensus_6628#1 ------------------------------------------------------------
consensus_6628#0 AGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGA 120
consensus_6628#1 ------TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGA 54
******************************************************
consensus_6628#0 GAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGA 180
consensus_6628#1 GAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGA 114
************************************************************
consensus_6628#0 AATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACA 240
consensus_6628#1 AATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACA 174
************************************************************
consensus_6628#0 TAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCC 300
consensus_6628#1 TAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCC 234
************************************************************
consensus_6628#0 GTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTA 360
consensus_6628#1 GTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTA 294
************************* **********************************
consensus_6628#0 CTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGG 420
consensus_6628#1 CTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGG 354
************************************************************
consensus_6628#0 ACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCA 480
consensus_6628#1 ACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCA 414
************************************************************
consensus_6628#0 TTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATA 540
consensus_6628#1 TTCCCAAGGACTTCCTTGCCATGAAGATCTCTAAC------------------------- 449
***********************************
consensus_6628#0 ACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATT 600
consensus_6628#1 ------------------------------------------------------------
consensus_6628#0 CCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCA 660
consensus_6628#1 -----------------------------------------TCTGTTCCGAGAAATGGCA 468
*******************
consensus_6628#0 GTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTT 720
consensus_6628#1 GTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTT 528
************************************************************
consensus_6628#0 TTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGC 780
consensus_6628#1 TTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGC 588
********************************** *************************
consensus_6628#0 ACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAG 840
consensus_6628#1 ACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAG 648
************* **************** *****************************
consensus_6628#0 GNGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAA 900
consensus_6628#1 GTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAA 708
* **********************************************************
consensus_6628#0 GGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGG 960
consensus_6628#1 GGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGG 768
************************************************************
consensus_6628#0 GTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGG 1020
consensus_6628#1 GTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGG 828
************************************************************
consensus_6628#0 AACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGA 1080
consensus_6628#1 AACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGA 888
************************************************************
consensus_6628#0 CCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTT 1140
consensus_6628#1 CCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTT 948
************************************************************
consensus_6628#0 TAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTT 1200
consensus_6628#1 TAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTT 1008
************************************************************
consensus_6628#0 GAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCT 1260
consensus_6628#1 GAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCT 1068
************************************************************
consensus_6628#0 TTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATT--T 1318
consensus_6628#1 TTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGT 1128
********************************************************* *
consensus_6628#0 ATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATC 1378
consensus_6628#1 ATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATC 1188
************************************************************
consensus_6628#0 CGCATCTAGAAAAGTTGAT 1397
consensus_6628#1 CGCATCTAGAAAAGTTGAT 1207
*******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||