cluster # 6632

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Oryza sativa
cluster # 6632 cluster # 6632 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6632#0 length = 810 sequences # 1

consensus_6632#1 length = 723 sequences # 3

consensusID : consensus_6632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 810
fasta sequence

                              [CGAGGACGAGACAAGGGGGATGAAGNGNTTCTTGNTANNGGCACGGGAGAAGATNAAAGCTTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTNTATGAAGCTTTGCTTANCAGNGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGATATTGAAGAAAATATGTGATCATCCGCTGNTGNTGACTAAGAAAGCTGCTGAGGGTGNTTTGGAAGGCATGGATGTGATGTTAAATAATCAAGAAATGGGAATGGTTGAGAAAATGGCCATGAACCTTGCANATATGGCTCATGATGATGATGACGCTGAATTGCAAGTTGGTCAGGATGNCTCGTGCAAGTTATCTTTTATGATGTNCTTGCTCCAAAATCTTGTTAGCGAGGGACACAACGTCTTAATCTTCTCGCAAACTCGTANAANGCTAAACATTATTCAGGAGGCTATAATATTAGAAGGCTATAAGNTTTTGCNCATTGATGGCACCACCANGATTCCTGAGAGGTAAAGGATTGTGAAGGACTTCCAAGAGGNANCTGGAGCTCCAATATTTTTGCTGACCACACAAGNTGNCNGGGCTTGGACTTACACTCACCAAGGCAGNTCGTGTCATAGTAGTNGATCCTGCTTGGAATCCAAGTACCGGACAATCAAAGNGTTGATCGGGCCTTATCGAAATTGGGCCAGATGAAAGANGTCATCGGTATNCCGCCTTNTGACATCTGGGACCCCTCGNAGAAANGTTTACAAATTGGGGCNCTTCAAGNGGGCTC]

[+] EMBL CA767550             [CGAGGACGAGACAAGGGGGATGAAGNGNTTCTTGNTANNGGCACGGGAGAAGATNAAAGCTTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTNTATGAAGCTTTGCTTANCAGNGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGATATTGAAGAAAATATGTGATCATCCGCTGNTGNTGACTAAGAAAGCTGCTGAGGGTGNTTTGGAAGGCATGGATGTGATGTTAAATAATCAAGAAATGGGAATGGTTGAGAAAATGGCCATGAACCTTGCANATATGGCTCATGATGATGATGACGCTGAATTGCAAGTTGGTCAGGATGNCTCGTGCAAGTTATCTTTTATGATGTNCTTGCTCCAAAATCTTGTTAGCGAGGGACACAACGTCTTAATCTTCTCGCAAACTCGTANAANGCTAAACATTATTCAGGAGGCTATAATATTAGAAGGCTATAAGNTTTTGCNCATTGATGGCACCACCANGATTCCTGAGAGGTAAAGGATTGTGAAGGACTTCCAAGAGGNANCTGGAGCTCCAATATTTTTGCTGACCACACAAGNTGNCNGGGCTTGGACTTACACTCACCAAGGCAGNTCGTGTCATAGTAGTNGATCCTGCTTGGAATCCAAGTACCGGACAATCAAAGNGTTGATCGGGCCTTATCGAAATTGGGCCAGATGAAAGANGTCATCGGTATNCCGCCTTNTGACATCTGGGACCCCTCGNAGAAANGTTTACAAATTGGGGCNCTTCAAGNGGGCTC]




>consensus_6632#0
CGAGGACGAGACAAGGGGGATGAAGNGNTTCTTGNTANNGGCACGGGAGAAGATNAAAGC
TTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTNT
ATGAAGCTTTGCTTANCAGNGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCG
CAATCACGATATTGAAGAAAATATGTGATCATCCGCTGNTGNTGACTAAGAAAGCTGCTG
AGGGTGNTTTGGAAGGCATGGATGTGATGTTAAATAATCAAGAAATGGGAATGGTTGAGA
AAATGGCCATGAACCTTGCANATATGGCTCATGATGATGATGACGCTGAATTGCAAGTTG
GTCAGGATGNCTCGTGCAAGTTATCTTTTATGATGTNCTTGCTCCAAAATCTTGTTAGCG
AGGGACACAACGTCTTAATCTTCTCGCAAACTCGTANAANGCTAAACATTATTCAGGAGG
CTATAATATTAGAAGGCTATAAGNTTTTGCNCATTGATGGCACCACCANGATTCCTGAGA
GGTAAAGGATTGTGAAGGACTTCCAAGAGGNANCTGGAGCTCCAATATTTTTGCTGACCA
CACAAGNTGNCNGGGCTTGGACTTACACTCACCAAGGCAGNTCGTGTCATAGTAGTNGAT
CCTGCTTGGAATCCAAGTACCGGACAATCAAAGNGTTGATCGGGCCTTATCGAAATTGGG
CCAGATGAAAGANGTCATCGGTATNCCGCCTTNTGACATCTGGGACCCCTCGNAGAAANG
TTTACAAATTGGGGCNCTTCAAGNGGGCTC

consensusID : consensus_6632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 723
fasta sequence

                              [AGGAACTTTCAGTTGTGAGCCTCAAAGATAAGATCAGAGACTACTCTGGTCCCAATGCAAATGCTCGCAACTATGAGCTTAAATATGCCTTCAAGGAGGGTGGAATCCTTTTAACAACATATGACATTGTTCGAAACAATTTCAAGATGATAAAAGGCAACTTCACCAATGATTTTGATGACGAGGAAGAAACATTATGGAACTATGTTATTCTTGATGAGGGGCATATTATCAAGAATCCAAAGACTCAGAGGGCTCAAAGTCTATTTGAAATACCCTGTGCACATCGTATTGTCATCAGTGGAACACCCATACAAAATAACTTGAAGGAAATGTGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGCTACCAATCGACAAAAGCACATAGGCTCAAATGTAGCAAAGGAATTAAGAGAACGGATAAAGCCATACTTTTTGCGACGCATGAAGAATGAAGTGTTTCTTGATAGCGGCACGGGAGAAGATAAAAAGCTTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTATATGNAAGCTTTTCTTAACAGTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGATATTGAAGAAAATATGTGATCATCCGCTG]

[+] EMBL OSS1367A             [AGGAACTTTCAGTTGTGAGCCTCAAAGATAAGATCAGAGACTACTCTGGTCCCAATGCAAATGCTCGCAACTATGAGCTTAAATATGCCTTCAAGGAGGGTGGAATCCTTTTAACAACATATGACATTGTTCGAAACAATTTCAAGATGATAAAAGGCAACTTCACCAATGATTTTGATGACGAGGAAGAAACATTATGGAACTATGTTATTCTTGATGAGGGGCATATTATCAAGAATCCAAAGACTCAGAGGGCTCAAAGTCTATTTGAAATACCCTGTGCACATCGTATTGTCATCAGTGGAACACCCATACAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF305597             [                                  tgacagCTACTCTGGTCCCAATGCAAATGCTCGCAACTATGAGCTTAAATATGCCTTCAAGGAGGGTGGAATCCTTTTAACAACATATGACATTGTTCGAAACAATTTCAAGATGATAAAAGGCAACTTCACCAATGATTTTGATGACGAGGAAGAAACATTATGGAACTATGTTATTCTTGATGAGGGGCATATTATCAAGAATCCAAAGACTCAGAGGGCTCAAAGTCTATTTGAAATACCCTGTGCACATCGTATTGTCATCAGTGGAACACCCATACAAAATAACTTGAAG                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF306342             [                                                                                                                                                                                                    ATGGAACTATGTTATTCTTGATGAGGGGCATATTATCAAGAATCCAAAGACTCAGAGGGCTCAAAGTCTATTTGAAATACCCTGTGCACATCGTATTGTCATCAGTGGAACACCCATACAAAATAACTTGAAGGAAATGTGGGCTCTGTTTTATTTCTGTTGCCCAGAAGTCTTGGGTGATAAGGAGCAGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAGGAAATGACAAGAATGCTACCAATCGACAAAAGCACATAGGCTCAAATGTAGCAAAGGAATTAAGAGAACGGATAAAGCCATACTTTTTGCGACGCATGAAGAATGAAGTGTTTCTTGATAGCGGCACGGGAGAAGATAAAAAGCTTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTATATGNAAGCTTTTCTTAACAGTGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCGCAATCACGATATTGAAGAAAATATGTGATCATCCGCTG]




>consensus_6632#1
AGGAACTTTCAGTTGTGAGCCTCAAAGATAAGATCAGAGACTACTCTGGTCCCAATGCAA
ATGCTCGCAACTATGAGCTTAAATATGCCTTCAAGGAGGGTGGAATCCTTTTAACAACAT
ATGACATTGTTCGAAACAATTTCAAGATGATAAAAGGCAACTTCACCAATGATTTTGATG
ACGAGGAAGAAACATTATGGAACTATGTTATTCTTGATGAGGGGCATATTATCAAGAATC
CAAAGACTCAGAGGGCTCAAAGTCTATTTGAAATACCCTGTGCACATCGTATTGTCATCA
GTGGAACACCCATACAAAATAACTTGAAGGAAATGTGGGCTCTGTTTTATTTCTGTTGCC
CAGAAGTCTTGGGTGATAAGGAGCAGTTCAAAGCAAGGTATGAGCACGCTATCATTCAAG
GAAATGACAAGAATGCTACCAATCGACAAAAGCACATAGGCTCAAATGTAGCAAAGGAAT
TAAGAGAACGGATAAAGCCATACTTTTTGCGACGCATGAAGAATGAAGTGTTTCTTGATA
GCGGCACGGGAGAAGATAAAAAGCTTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAAT
TAACATCTTGCCAGAGGCAATTATATGNAAGCTTTTCTTAACAGTGAACTAGTTCATTCA
TCAATGCAAGGGTCACCCTTGGCCGCAATCACGATATTGAAGAAAATATGTGATCATCCG
CTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6632#0      CGAGGACGAGACAAGGGGGATGAAGNGNTTCTTGNTANNGGCACGGGAGAAGATNAAAGC 60
consensus_6632#1      --------------------------------------AGGAACTTTC--AGTTGTGAGC 20
                                                             ** **      ** *   ***

consensus_6632#0      TTGCTAAGAAGAATGAGCTAATTATCTGGCTGAAATTAACATCTTGCCAGAGGCAATTNT 120
consensus_6632#1      CTCAAAGATAAGATCAGAGACTACTCTGGTCCCAATGCAAATGCTCGCAACTATGAGCTT 80
                       *   *   *  ** **  * *  *****    ***  * **  *  **      *   *

consensus_6632#0      ATGAAGCTTTGCTTANCAGNGAACTAGTTCATTCATCAATGCAAGGGTCACCCTTGGCCG 180
consensus_6632#1      A--AATATGCCTTCAAGGAGGGTGGAATCCTTTTAACAACATATGA--CATTGTTCGAAA 136
                      *  **  *    * *     *    * * * ** * ***   * *   **   ** *   

consensus_6632#0      CAATCACGATATTGAAGAAAATATGTGATCATCCGCTGNTGNTGACTAAGAAAGCTGCTG 240
consensus_6632#1      CAATTTCAAGATGATAAAAGGCAACTTCACCAATGATTTTGATGACGAGGAAGAAACATT 196
                      ****  * * **   * **   *  *   *    * *  ** **** * ***      * 

consensus_6632#0      AGGGTGNTTTGGAAGGCATGGATGTGATGTTAAATAATCAAGAAATGGGAATGGTTGAGA 300
consensus_6632#1      ATGGAACTATGTTATTC-TTGATGAGGGGC-ATATTATCAAGAATCC--AAAGACTCAGA 252
                      * **   * **  *  * * **** *  *  * ** ********     ** *  * ***

consensus_6632#0      AAATGGCCATGAACCTTGCANATATGGCTCATGATGATGATGACGCTGAATTGCAAGTTG 360
consensus_6632#1      G---GGCTCAAAGTCTATTTGAAATACCCTGTG--------CACATCGTATTGTCA-TCA 300
                          ***    *  **     * **  *   **         **   * ****  * *  

consensus_6632#0      GTCAGGATGNCTCGTGCAAGTTATCTTTTATGATGTNCTTGCTCCAAAATCTTGTTAGCG 420
consensus_6632#1      GT--GGAACACCCATACAAAATAACTTGAAGGAAATGTGGGCTCT---GTTTTATTTCTG 355
                      **  ***   * * * ***  ** ***  * **  *    ****     * ** **   *

consensus_6632#0      AGGGACACAACGTCTTAATCTTCTCGCAAACTCGTANAANGCTAAACATTATTCAGGAGG 480
consensus_6632#1      TTGCCCAGAA-GTCTTGGG--TGATAAGGAGCAGTTCAAAGCAAGGTAT----GAGCACG 408
                        *  ** ** *****     *       *   **  ** ** *   **     ** * *

consensus_6632#0      CTATAATATTAGAAGGCTATAAGNTT-TTGCNCATTGATGGCACCACCANGATTCCTGAG 539
consensus_6632#1      CTATCATTCAAGGAAATGACAAGAATGCTACCAATCGACAAAAGCACATAGGCTCAAATG 468
                      **** **   ** *    * ***  *  * *  ** **    * ***   *  **    *

consensus_6632#0      AGGTAAAGGATTGTGAAGGACTTCCAAGAGGNANCT------GGAGCTCCAATATTTTTG 593
consensus_6632#1      TAGCAAAGGAATTAAGAGAACGGATAAAGCCATACTTTTTGCGACGCATGAAGAATGAAG 528
                        * ****** *    ** **    **       **      *  **   ** * *   *

consensus_6632#0      CTGACCACACAAGNTGNCNGGGCTTGGACTTACACTCACCAAGGCAGNTCGTGTCATAGT 653
consensus_6632#1      TGTTTCTTGATAGCGGCACGGGAGAAGATAAAAAGCTTGCTAAGAAGAATGAGC-----T 583
                           *     **  *   ***    **   * *     * * * **   * *      *

consensus_6632#0      AGTNGATCCTGCTTGGAATCCAAGTACCGGACAATCAAAGNGTTGATCGGGCCTTATCGA 713
consensus_6632#1      AATTA--TCTGGCTGAAATTAACATCTTGCCAGAGGCAATTATATGNAAGCTTTTCTTAA 641
                      * *     ***  ** ***  *  *   *    *   **   *      *   ** *  *

consensus_6632#0      AATTGGGCCAGATGAAAGANGTCATCGGTATNCCGCCTTNTGACATCTGGGACCCCTCGN 773
consensus_6632#1      CAGTGAACTAGTTCA-----TTCATCAATGCAAGG----GTCACCCTTGGCCGCAATCAC 692
                       * **  * ** * *      *****  *     *     * **   ***   *  **  

consensus_6632#0      AGAAANGTTTACAAATTGGGGCNCTTCAAGNGGGCTC 810
consensus_6632#1      GATATTGAAGAAAATATGTGATCATCCGCTG------ 723
                         *  *   * **  ** *    * *