These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 213 fasta sequence [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA-CTC-TTTTCTAT-CTCTGTATATGTTAGGAAATGTTATCTAC-TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU091487 [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTACCTCNTTTTCTATCCTCTGTATATGTTAGGAAATGTTATCTACNTTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184302 [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA CTC TTTTCTAT CTCTGTATATGTTAGGAAATGTTATCTAC TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTTGCAATTTAAAAAAAA ] [+] EMBL AU095469 [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA CTC TTTTCTAT CTCTGTATATGTTAGGAAATGTTATCTAC TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCAaa ] consensusID : consensus_6638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTTGTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAATGTTATCTACTTNNTTTTCNAAAAAAAAAAA] [+] EMBL AU161591 [GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTTGTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAATGTTATCTACTTNNTTTTCNAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6638#0 GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTT 60 consensus_6638#1 GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTT 60 **************************** ****************** ******* **** consensus_6638#0 GTTTATTCATGTACATGAACCGTGGTTTACTCTTTTCTATCTCTGTATATGTTAGGAAAT 120 consensus_6638#1 GTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAAT 120 ************ ***************** ********************** ** *** consensus_6638#0 GTTATCTACTTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTG 180 consensus_6638#1 GTTATCTACTTNNTTTTCNAAAAAAAAAAA------------------------------ 150 *********** ***** * *** consensus_6638#0 CAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA 213 consensus_6638#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||