cluster # 6638

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6638 cluster # 6638 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6638#0 length = 213 sequences # 3

consensus_6638#1 length = 150 sequences # 1

consensusID : consensus_6638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 213
fasta sequence

                              [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA-CTC-TTTTCTAT-CTCTGTATATGTTAGGAAATGTTATCTAC-TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU091487             [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTACCTCNTTTTCTATCCTCTGTATATGTTAGGAAATGTTATCTACNTTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU184302             [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA CTC TTTTCTAT CTCTGTATATGTTAGGAAATGTTATCTAC TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTGCAGTTTTTTTATTTGCAATTTAAAAAAAA    ]
[+] EMBL AU095469             [GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTTGTTTATTCATGTACATGAACCGTGGTTTA CTC TTTTCTAT CTCTGTATATGTTAGGAAATGTTATCTAC TTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCAaa                                         ]




>consensus_6638#0
GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTT
GTTTATTCATGTACATGAACCGTGGTTTACTCTTTTCTATCTCTGTATATGTTAGGAAAT
GTTATCTACTTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTG
CAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTTGTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAATGTTATCTACTTNNTTTTCNAAAAAAAAAAA]

[+] EMBL AU161591             [GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTTGTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAATGTTATCTACTTNNTTTTCNAAAAAAAAAAA]




>consensus_6638#1
GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTT
GTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAAT
GTTATCTACTTNNTTTTCNAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6638#0      GTGCGCTACTACTTGTTGCATGCCTTCGTTCGTTGTCATCGTTGTTCTCTGTCTAAATTT 60
consensus_6638#1      GTGCGCTACTACTTGTTGCATGCCTTCGNTCGTTGTCATCGTTGTTCACTGTCTANATTT 60
                      **************************** ****************** ******* ****

consensus_6638#0      GTTTATTCATGTACATGAACCGTGGTTTACTCTTTTCTATCTCTGTATATGTTAGGAAAT 120
consensus_6638#1      GTTTATTCATGTNCATGAACCGTGGTTTACNCTTTTCTATCTCTGTATATGTTNGGGAAT 120
                      ************ ***************** ********************** ** ***

consensus_6638#0      GTTATCTACTTCATTTTCATGGGACTAAACTCTACTGTGTTCATCATGCATCTCAATGTG 180
consensus_6638#1      GTTATCTACTTNNTTTTCNAAAAAAAAAAA------------------------------ 150
                      ***********  *****     *  ***                               

consensus_6638#0      CAGTTTTTTTATTAAAAAAAAAAAAAAAAAAAA 213
consensus_6638#1      ---------------------------------