cluster # 6646

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Oryza sativa
cluster # 6646 cluster # 6646 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6646#0 length = 514 sequences # 3

consensus_6646#1 length = 391 sequences # 1

consensusID : consensus_6646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 514
fasta sequence

                              [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC-AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA]

[+] EMBL AA750728             [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTC        CAGGTAGATTGGAATTGGATCATGGCTGGATGGATGA                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA767514             [                TACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACCGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACT             ]
[+] EMBL AU029707             [                     AACTGTGGTGGAACATGCAATCCTTGCGGCAATCCTATGNACCCGCTCACGGTCGATTGATCTGACAAGCAAAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCNGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA]




>consensus_6646#0
CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATG
GAACCGCTCACGGTCGATTGATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTT
TATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCG
ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGG
CGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATA
TGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTC
AACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGC
CTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATC
ATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA

consensusID : consensus_6646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA]

[+] EMBL BI795167             [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA]




>consensus_6646#1
ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATT
ACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCC
CCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGA
TATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAA
CACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTA
TAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATA
ATAAAGCTCTGGGTTACTGTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6646#0      CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATG 60
consensus_6646#1      ------------------------------------------------------------
                                                                                  

consensus_6646#0      GAACCGCTCACGGTCGATTGATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTT 120
consensus_6646#1      ------------------------------------------------------------
                                                                                  

consensus_6646#0      TATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCG 180
consensus_6646#1      -ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTT--AAGTGACAAAGGCA 57
                       ******************************************   * *********** 

consensus_6646#0      ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGG 240
consensus_6646#1      ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACG-ACGG 116
                      ******************************************************* ****

consensus_6646#0      CGCCCCATAAAATCACCTG-CAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 299
consensus_6646#1      CGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 176
                      ******************* ****************************************

consensus_6646#0      ATGATATTGATAGATCATCGTCGGCAC-CATCATTCCTCTGAAAGATTTCGCACGGCATT 358
consensus_6646#1      ATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATT 236
                      *************************** ********************************

consensus_6646#0      TCAAC-CTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCT 417
consensus_6646#1      TCAACACTCCAACTCCCAACGTACCCCAAAAA--GTAACTAGGCCAGGTGAGCATCTGCT 294
                      ***** **************************  **************************

consensus_6646#0      AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 477
consensus_6646#1      AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 354
                      ************************************************************

consensus_6646#0      ATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA 514
consensus_6646#1      ATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA 391
                      ***************************     *****