These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence [TTTTTTTTTTTTTAAAGAAATG-GCCTTG-CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT] [+] EMBL CA763303 [TTTTTTTTTTTTTAAAGAAATG GCCTTG CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGG ] [+] EMBL CB632762 [ gTAAAGAAATGAGCCTTGACTGGCCTTTAAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAATGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAACAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT] consensusID : consensus_6649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT] [-] EMBL CA764017 [NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT] consensusID : consensus_6649#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC] [-] EMBL BM421346 [TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6649#1 NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACC 60 consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 ------------------------------------------------------------ consensus_6649#1 TCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 120 consensus_6649#2 -------------------------------------TTTTTTTTTAAATGGGACCGCCC 23 consensus_6649#0 --------TTTTTTTTTTTTTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 52 * * ***** ********* consensus_6649#1 ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 180 consensus_6649#2 ACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTA 83 consensus_6649#0 ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 112 *** *************** ************************ ** ************ consensus_6649#1 AGACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 236 consensus_6649#2 AGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGG 143 consensus_6649#0 AAACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 168 * ************* ******************* ** ************** *** * consensus_6649#1 GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 289 consensus_6649#2 GGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCT 203 consensus_6649#0 GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 221 ********* * ****** ** *********** ********************* consensus_6649#1 G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 342 consensus_6649#2 GCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGA 263 consensus_6649#0 G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 274 * ********** **** * ************* ****************** *** consensus_6649#1 GC---ATGAACCTG-ACAAC--ACCTCTGCAGTCGAAGAGTAG-----CACGGC-ATTGC 390 consensus_6649#2 GCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGC 323 consensus_6649#0 GC---ATGAACCTG-ACAAC--ACCTCTNCAGTCGAAGAGTAG-----CACGGC-ATTGC 322 ** * **** ***** ***** * * ** ** ****** ***** consensus_6649#1 TT---GTATC-ATGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 440 consensus_6649#2 CTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGC 383 consensus_6649#0 TT---GTATC-AGGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 372 * ***** * ************** * ***** ** * * ******** * consensus_6649#1 A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 495 consensus_6649#2 ACATCCATCCATGCAAGGTGTATCTAGTGTCGATC------------------------- 418 consensus_6649#0 A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 427 * **** ******* ***************** consensus_6649#1 ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 555 consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 487 consensus_6649#1 TACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT------------------------- 590 consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 TACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTC 547 consensus_6649#1 ------------------------------------------------------------ consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 AATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAAC 607 consensus_6649#1 ------------------------------------------------------------ consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 AACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGA 667 consensus_6649#1 ------------------------------------------------------------ consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 TCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATAC 727 consensus_6649#1 ------------------------------------------------------------ consensus_6649#2 ------------------------------------------------------------ consensus_6649#0 ATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGG 787 consensus_6649#1 ------------------------ consensus_6649#2 ------------------------ consensus_6649#0 GACCTGAAGCAGTAGTACTCTTCT 811 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||