These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1978 fasta sequence [CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCTCCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCCGGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTCTCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAGACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTAACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAAGAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATATTACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGATCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTAGAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGATTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCCAAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCGATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAACATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAATAATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAGAACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAAGTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATTATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAACATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTTCAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGAGTTATGCATGGTTAGGAAATA] [+] EMBL AK063374 [CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCTCCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCCGGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTCTCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAGACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTAACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAAGAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATATTACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGATCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTAGAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGATTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCCAAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCGATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAACATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAATAATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAGAACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAAGTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATTATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAACATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTTCAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTT ] [-] EMBL CA760618 [ TCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCATTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTCCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAAaaaaaaaa ] [+] EMBL OSS14455A [ AGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGAGTTATGCATGGTTAGGAAATA] consensusID : consensus_6663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [GCGTTGGGATTGGCAAAGTGTGACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGACACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTGATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCACATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAAGGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA] [+] EMBL BM420820 [GCGTTGGGATTGGCAAAGTGTGACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGACACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTGATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCACATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAAGGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6663#0 CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCT 60 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCC 120 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTC 180 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAG 240 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTA 300 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAA 360 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATAT 420 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGA 480 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTA 540 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGA 600 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCC 660 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 AAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCG 720 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAA 780 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAAT 840 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 AATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAAC 900 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGA 960 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAG 1020 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 AACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAA 1080 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATT 1140 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAA 1200 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTT 1260 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGC 1320 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 AGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGT 1380 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACT 1440 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTAT 1500 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTC 1560 consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTT 1620 consensus_6663#1 ------------------------------------GCGTTGG--GATTGGCAAAGTGTG 22 * ** * **** *** * consensus_6663#0 GTTAAAAAACCAAAGTTCACGCGTTGGAT-TGCAAGTTACTTTTCATGTTGTCCAGGGCC 1679 consensus_6663#1 ACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGAC 82 ** **** * ** ** * * * *** ** * * * consensus_6663#0 TGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGT 1739 consensus_6663#1 --ACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTG 140 * *** * ** * * ** * ** ** * * *** ** consensus_6663#0 TTATCATTGAAGACAAGTT-GCCAAT---GAAGATTC--AGAAGCTTGATT--GTGTCAC 1791 consensus_6663#1 ATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCAC 200 * ************** ****** ******* ********* * ******* consensus_6663#0 ATTT--GTTGTAC--AGATG--TTACT-ACTATGTCT--AGAAGTTTTA-CAT-ACTTA- 1839 consensus_6663#1 ATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAA 260 *** ****** ***** ***** ******* ********** *** ***** consensus_6663#0 GGATAA--CGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTT 1897 consensus_6663#1 GGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTT 320 **** * **************************************************** consensus_6663#0 GGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGA 1957 consensus_6663#1 GGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA----- 375 ***************************************** ******** * consensus_6663#0 GTTATGCATGGTTAGGAAATA 1978 consensus_6663#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||