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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1978 fasta sequence
[CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCTCCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCCGGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTCTCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAGACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTAACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAAGAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATATTACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGATCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTAGAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGATTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCCAAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCGATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAACATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAATAATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAGAACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAAGTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATTATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAACATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTTCAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGAGTTATGCATGGTTAGGAAATA]
[+] EMBL AK063374 [CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCTCCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCCGGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTCTCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAGACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTAACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAAGAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATATTACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGATCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTAGAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGATTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCCAAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCGATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAACATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAATAATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAGAACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAAGTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATTATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAACATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTTCAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTT ]
[-] EMBL CA760618 [ TCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGCAGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCATTGGTGTGTGGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAAGTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTCCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAAaaaaaaaa ]
[+] EMBL OSS14455A [ AGTGACTACTCTGGTGCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATTTGTTGTACAGATGTTACTACTATGTCTAGAAGTTTTACATACTTAGGATAACGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGAGTTATGCATGGTTAGGAAATA]
consensusID : consensus_6663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[GCGTTGGGATTGGCAAAGTGTGACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGACACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTGATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCACATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAAGGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA]
[+] EMBL BM420820 [GCGTTGGGATTGGCAAAGTGTGACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGACACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTGATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCACATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAAGGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTTGGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6663#0 CGGAGCCCGAGGTCGCTTGGAGTCGGCGCGGCGGCGCACGCAATGCCCGCCCTGCAGCCT 60
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 CCACCGGCGTCGTCTCCGGGGCGGGAGCGGGAGCGGGGCGACGCGGCTGCTTCCTCCGCC 120
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GGTGGGCGCCGCCGCTCTCGCTCGCCGCCTTGGAGCCCTCGCGCGCGGTCCCCGTCCCTC 180
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 TCGCGGTCGCCGCCCTCGTCGTCGTCGTCGTCCTCCGAGGATGAACGTGAGAATTGCGAG 240
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 ACCCAAACTGAAACTGCATGGATGGAATTGGGATTCTCAAATTCAGGGCCTCGAGGTGTA 300
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 ACTGAGATCACTTATCTTCTGAGGTCCCACGAGCTCAAGATCAGTGAGTTGGAGTCAAAA 360
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GAGCAGATTTACTGCAACAGCCTGGTTCAACTCGAAGAGAGAATCGCATCACTAGAATAT 420
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 TACAAGGAGAAATTGCTTACAAGACTTTCATGGACAGAAGAGGCCAATTCGACTTTGAGA 480
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 TCTGACAATTCCAAATTGAAGAATTTGGCATACAGTCTTAAGGAAAGGGTGGACGAGTTA 540
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GAAAAAGACAACTTCATGCTAGGGCTGAAGATGAATGAGTTTGCTCAAGAGATGGAACGA 600
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 TTTCAGATGCAGGTAGGATCAACCAACACACAGATGCAGGATAATCTTGATGATATGGCC 660
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 AAAGCTTTTGAATCTAAAGAAAGACATGTCACCTTCACACAACAAAAACTAGCGGATTCG 720
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 ATCAACCATCACGAAGAAAGAATCACAACACTAGAACAGGATATAAGCCAATGTACTCAA 780
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 CATGTTCAATCACTTCAGGTCAAGGTAAAATCAAACACCAGTCAACTGGAAACCAATAAT 840
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 AATGATCATCATTCGCTTGAGAATAGGATTCAAGTTTTGGAATCAACAGAAAGGCAGAAC 900
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GCTTCTAGATTGGTGAAAATGGAGGAGTCTATTATCCATCAGCATGAAAGAACCATAGGA 960
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GTAGAGCAAGACTTGAGTGCAAATATAACTCAACATGGTCAGCAAATTCAAACGCTCCAG 1020
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 AACAAAGTACAACTGCAAACCAATAATAATGAAGCTCATTTGCTTGAGAATAGGATTCAA 1080
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GTTTTGGAATCAGCAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAAGATTCTATT 1140
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 ATCCATCAGCATGAAAGAATCATAGGAGTAGAGCAAGACATGAGTGCAAATATAACTCAA 1200
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 CATGGTCAGCAAGTTCAAACGCTCCAGAACAAAGAAAATGATGTTCTTATGAAGTCTTTT 1260
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 CAGTCGCTGCTCACTTGTATGGTACCATTTATTGTTGCGTTTCTGCTATCAATGCTTAGC 1320
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 AGCCAATCTGATTTCGGTGAATATGAGAAGGATCTTGTGATTCAAGTTTCGTTGGTGTGT 1380
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GGATTACCTGGCGTAATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACT 1440
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 TCTATCGTAGCAAGCTTGACATTATACTTTGTCATTTATAGCATCACATTAGTGTATTAT 1500
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 GCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCTACTGTC 1560
consensus_6663#1 ------------------------------------------------------------
consensus_6663#0 ATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTT 1620
consensus_6663#1 ------------------------------------GCGTTGG--GATTGGCAAAGTGTG 22
* ** * **** *** *
consensus_6663#0 GTTAAAAAACCAAAGTTCACGCGTTGGAT-TGCAAGTTACTTTTCATGTTGTCCAGGGCC 1679
consensus_6663#1 ACCTGTTGTGCATGGTTCGTTCCACGGGCCTGGAGATGGATGACGATGGTGCTGATTGAC 82
** **** * ** ** * * * *** ** * * *
consensus_6663#0 TGAATGATAGATGTCTATTACAGGAGGTAAACAAGTGACTACTCTGGTGCCTTGCAAAGT 1739
consensus_6663#1 --ACGGATCGGTGATAAACAAAGTGACTGGACTGCTGGGTGCCCTGTGGCAAAAGTGTTG 140
* *** * ** * * ** * ** ** * * *** **
consensus_6663#0 TTATCATTGAAGACAAGTT-GCCAAT---GAAGATTC--AGAAGCTTGATT--GTGTCAC 1791
consensus_6663#1 ATGCAATTGAAGACAAGTTCGCCAATATGGAAGATTGCAAGAAGCTTGGATTGGTGTCAC 200
* ************** ****** ******* ********* * *******
consensus_6663#0 ATTT--GTTGTAC--AGATG--TTACT-ACTATGTCT--AGAAGTTTTA-CAT-ACTTA- 1839
consensus_6663#1 ATTGTGGTTGTAACAAGATGGTTTACTGACTATGTGCTGAGAAGTTTTAACATGACTTAA 260
*** ****** ***** ***** ******* ********** *** *****
consensus_6663#0 GGATAA--CGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTT 1897
consensus_6663#1 GGATGAACCGTTGAAGAACTTTTGCTCATAGCTAATAGAAAGCGAGAGATATGCTAACTT 320
**** * ****************************************************
consensus_6663#0 GGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTTTTAATCAACCGTAAACGA 1957
consensus_6663#1 GGATAAAGTCTAGATATTTCTACTGCCTTCAATTCCTTTTTNTTAATCAAAAAAA----- 375
***************************************** ******** *
consensus_6663#0 GTTATGCATGGTTAGGAAATA 1978
consensus_6663#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||