cluster # 6665

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Oryza sativa
cluster # 6665 cluster # 6665 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6665#0 length = 911 sequences # 3

consensus_6665#1 length = 593 sequences # 1

consensusID : consensus_6665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 911
fasta sequence

                              [CGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAG-GTGCTGGATTCGCTCACCAACGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTC-GATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA]

[+] EMBL AK059081             [CGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAG GTGCTGGATTCGCTCACCAACGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTC GATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGC                                            ]
[+] EMBL C28999               [                                                                                                                                                                                           aGAGNGTGCTGGATTCGCTCGCCAACGACGGCACCATCGACGCGCTCCG ATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGAGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTNTCTTCTGCCGCCTCAG GGTATCGACATGATGCCACCTNCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTTCAGAT TGGGGTTAGAAGAGCAAGGAGATT                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU182061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGCCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGNGGTGAGAAGAGCAAGAANATTGATACCCCGGAAAAACCATCGTCATCATCAAGNAACAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTNAGGATAGCAGCCAGAAGTGATGCTTGTCGGATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTNCAATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA]




>consensus_6665#0
CGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTCGCCGCGGCT
CCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCGGATCCCGCG
CGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGAAGGTGGTGC
GGCCGGAGGAGGTGCTGGATTCGCTCACCAACGACGGCACCATCGACGCGCTCCGCATGA
AGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGG
AGCAAAGCAGGGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTG
ATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGG
ATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTGTCT
TCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTATTCCTTCTC
ACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGGTGAGAAGAGCAAGGAGATTGAT
ACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCACTACAAAA
GGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTGAGGATAGC
AGCCAGAAGTGATGCTTGTCGATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGC
CATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTAC
AATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCTAGCCAGATTCTATGTGACTTGAC
TGCTAAAAAAA

consensusID : consensus_6665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGCGACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGNGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNTCGCTCGTCAACGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGATATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGCTNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCAGTCCTTNGAAANCTTCAAGGGAAGTCTNGGNCNNATACTTGAGANTGGTNGNCTTTGNTAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATATGCCACCTCCACCTTTNAACATCTNNTCCTCTNACCATGANTGTGNNGAAACATTTC]

[+] EMBL AA751447             [GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGCGACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGNGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNTCGCTCGTCAACGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGATATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGCTNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCAGTCCTTNGAAANCTTCAAGGGAAGTCTNGGNCNNATACTTGAGANTGGTNGNCTTTGNTAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATATGCCACCTCCACCTTTNAACATCTNNTCCTCTNACCATGANTGTGNNGAAACATTTC]




>consensus_6665#1
GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGC
GACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTC
GACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCG
NGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNTCGCTCGTCAAC
GACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGAT
ATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGCT
NNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCAG
TCCTTNGAAANCTTCAAGGGAAGTCTNGGNCNNATACTTGAGANTGGTNGNCTTTGNTAA
NAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATATGCC
ACCTCCACCTTTNAACATCTNNTCCTCTNACCATGANTGTGNNGAAACATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6665#0      -----------------------------CGGAAAGAAACCCTAGACCTCCGTCTCCGGC 31
consensus_6665#1      GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGC 60
                                                    *************** *** **** *****

consensus_6665#0      GACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTC 91
consensus_6665#1      GACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTC 120
                      *********** **** ************ ******************************

consensus_6665#0      GACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCG 151
consensus_6665#1      GACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCG 180
                      ************ **************** ******************************

consensus_6665#0      GGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAGGTGCTGGATTCGCTCACCAA 211
consensus_6665#1      NGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNT-CGCTCGTCAA 239
                       *********** * ******************** ** *** **** * *****  ***

consensus_6665#0      CGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGA 271
consensus_6665#1      CGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGA 299
                      ************** **** ************************************ ***

consensus_6665#0      TATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGC 331
consensus_6665#1      TATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGC 359
                      *** ******** ** **** ****************** ***************** **

consensus_6665#0      TGAGAAGAAGACCAAGAGGGAGTTGTTTG--ATGCCCTTCGGCAGGAATTGGAAAATCCA 389
consensus_6665#1      TNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCA 419
                      *  * *************** *** ***   ************************* ***

consensus_6665#0      GTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGG 449
consensus_6665#1      GTCCTTN-GAAANCTTCAAGGGAAGTCTNGGN-CNNATACTTGAGANTGGTNGNCTTTGN 477
                      ******  **** *************** **  *  ********** **** * **  * 

consensus_6665#0      AAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGG-GATCGACATGAT 508
consensus_6665#1      TAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATAT 537
                       ** ***** **  *****    *** * *****  * ** **  *  * ** ***  **

consensus_6665#0      GCCACCTCCACCTT-CAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTG 567
consensus_6665#1      GCCACCTCCACCTTTNAACATCTNNTCCT-CTNACCATGANTGTGNN-GAAACATTTC-- 593
                      **************  *******  **** ** **** **  * *   *******  *  

consensus_6665#0      CAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCA 627
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      AGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGT 687
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      GCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTCGATGCTG 747
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      CAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAA 807
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      AAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGC 867
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      TGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA 911
consensus_6665#1      --------------------------------------------