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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1455 fasta sequence
[AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCGCCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAGGCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGACCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCATGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGGTGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGGCGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCGAGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCAACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCACCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCGTCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCGTGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGATCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTT]
[+] EMBL AK063270 [AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCGCCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAGGCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGACCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCATGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGGTGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGGCGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCGAGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCAACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCACCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCGTCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCGTGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGATCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTT]
[+] EMBL OSS1331A [ TCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTNCGCCGCGCCGG GCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAACTGGTCGTCGAGGTCATGTACGGCG ]
consensusID : consensus_6670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[GAACACTTTCTCTCCTCGTCTCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA]
[+] EMBL BM420125 [GAACACTTTCTCTCCTCGTCTCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA]
consensusID : consensus_6670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[TNTNGNGTAGCCNGATCGTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCATCGACGTCCTCCGCCGCGCCNGCGANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCTNCGTCGCGGCGNTGTCGCCCCTNCNANCTNTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGCGCTGGAAGCATGGTGAGGAGGCACGCGGC]
[+] EMBL OSC601 [TNTNGNGTAGCCNGATCGTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCATCGACGTCCTCCGCCGCGCCNGCGANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCTNCGTCGCGGCGNTGTCGCCCCTNCNANCTNTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGCGCTGGAAGCATGGTGAGGAGGCACGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6670#0 AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCG 60
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGT 120
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGG 180
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATG 240
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 ATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCG 300
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAG 360
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 GCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGA 420
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCA 480
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 TGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGG 540
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 TGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGG 600
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCG 660
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 AGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCA 720
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 ACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCA 780
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCG 840
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 TCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCG 900
consensus_6670#1 ------------------------------------------------------------
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 TGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGA 960
consensus_6670#1 ----------------------------------------GAACACTTTCTCTCCTCGTC 20
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 TCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCA 1020
consensus_6670#1 TCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCA 80
consensus_6670#2 -------------------------------------------TNTNGNGTAGCCNGATC 17
* * *** *
consensus_6670#0 CTCTACTGAAGAAGCAGGCGG-CGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACG 1079
consensus_6670#1 CTCTACTGAAGAAGCAGGCGG-CGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACG 139
consensus_6670#2 GTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCAT-CGACGTCCTC--CGCCGCGCCN 74
** * * * *** * ** **** *** * ** ** * * ******* *
consensus_6670#0 GCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGC 1139
consensus_6670#1 GCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGC 199
consensus_6670#2 GC------GANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCAT 128
** * ** * ** ** * * * * * *** * ** * *
consensus_6670#0 GGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACC 1199
consensus_6670#1 GGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACC 259
consensus_6670#2 G--TACGGCGTCAGGATCGTCGCGGACGCTN-CGTCGCGGCGNTGTCGCCCCTNCNANCT 185
* *** * ** * * ** * * * * * * ** * *
consensus_6670#0 GGCACCGCCATGGAGTTCGCCGTGGCCGCCGT-CGAGAAGCTGCTCGGCCGCGACGTGGC 1258
consensus_6670#1 GGCACCGCCATGGAGTTCGCCGTGGCCGCCGT-CGAGAAGCTGCTCGGCCGCGACGTGGC 318
consensus_6670#2 NTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGC 245
* * *** * ** * * * ** ** * * ****** ** ** ***
consensus_6670#0 GCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGAT 1318
consensus_6670#1 GCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGAT 378
consensus_6670#2 GCTGGAAGC-ATGGTGAGGAGGCACGCGGC------------------------------ 274
** * * ** * ** **
consensus_6670#0 CAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTT 1378
consensus_6670#1 CAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTT 438
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 CCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAA 1438
consensus_6670#1 CCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAA 498
consensus_6670#2 ------------------------------------------------------------
consensus_6670#0 ACTTATAAGGGTGTTTT----------------------------------------- 1455
consensus_6670#1 ACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA 556
consensus_6670#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||