cluster # 6675

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Oryza sativa
cluster # 6675 cluster # 6675 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6675#0 length = 539 sequences # 3

consensus_6675#1 length = 386 sequences # 1

consensusID : consensus_6675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 539
fasta sequence

                              [GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC-AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGC-AGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTATGCGGTTACGGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCCTATTGTGAATAAGGGCCCG]

[+] EMBL BE230523             [GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCG CATCGGCTGCCCCTCCTACCTCGTGCAGTT CTTCGCCTGGACTAGAACTAGGAGCTCAANCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCNCTGCAATCTCCTCAACAAC ATCTCATACGCCCGCACTCGCCGGTCCCGGTGGTGCTATANCAA TATGCGGTTACGGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCCTATTGTGAATAAGGGCCCG]
[+] EMBL BE230499             [ CACGCAAGGTCGGCACCCACGGGTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGC AGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTAGGCGGTTAC                                                                               ]
[+] EMBL BE230166             [ CACGCAAGGTCGGCACCCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGCAAGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAgt                                                                                          ]




>consensus_6675#0
GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCATTGATCTTGACGGCGAAC
CCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGA
ACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGG
TGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCT
CCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTC
CTTAGCCTGGACTAGAACTAGGAGCTCAGCGGCAAGCTACCCATCGCCGTGCGCATCGCC
GAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGCAGCTCAGACGCCGCCA
CTCGCCGGTCCCGGTGGTGCTAGAGCAAGTATGCGGTTACGGGAACCTCAAGGCCCCCCA
AGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCCTATTGTGAATAAGGGCCCG

consensusID : consensus_6675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCCGTTGCAACATCCAGGCCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGCGANATGTTCACCAGCGTGGTGGCGAACACCCTGTNCTCNGCGCCNGGGGGGAAAACACTACGATGGATTCACTGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCCCTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGACNCACGGGGNNGNTACCCTCNCCCTNCGCATNTCCCAAAAGGGGGNNGT]

[+] EMBL BE228299             [GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCCGTTGCAACATCCAGGCCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGCGANATGTTCACCAGCGTGGTGGCGAACACCCTGTNCTCNGCGCCNGGGGGGAAAACACTACGATGGATTCACTGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCCCTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGACNCACGGGGNNGNTACCCTCNCCCTNCGCATNTCCCAAAAGGGGGNNGT]




>consensus_6675#1
GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANCACGGCTGCCATGATTCTCCCTCAT
TGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCCGTTGCAACATCCAGGCC
ACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGCGA
NATGTTCACCAGCGTGGTGGCGAACACCCTGTNCTCNGCGCCNGGGGGGAAAACACTACG
ATGGATTCACTGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCCCTCCT
ACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGACNCACGGGGNNGNTACCCTCNCC
CTNCGCATNTCCCAAAAGGGGGNNGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6675#0      ------------------GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCA 42
consensus_6675#1      GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANC-ACGGCTGCCATGATTCTCCCTCA 59
                                        ************ *** * **** ******************

consensus_6675#0      TTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGG 102
consensus_6675#1      TTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCC-GTTGCAACATCCAGG 118
                      ***************** ************************** ******** ******

consensus_6675#0      CCACGCTCGCCAGGG-AGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGC 161
consensus_6675#1      CCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGC 178
                      *************** **** ************ **************************

consensus_6675#0      GAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACT 221
consensus_6675#1      GANATGTTCACCAGCGTGGTGGCGAACACCC-TGTNCTCNGCGCCNGGGGGGAAAACACT 237
                      ** ********************** ***** *** *** ***** * ** ** ******

consensus_6675#0      ACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCC 281
consensus_6675#1      AC-GATGGATTCAC-TGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCC 295
                      ** *********** ****** * **** ******* ** *** ** * ***** *****

consensus_6675#0      CTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTCAGCGGCAAGCTACC 341
consensus_6675#1      CTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGA-CNCACGGGGNNGNTACC 354
                      *********** *  ************* **** ******** * **  **   * ****

consensus_6675#0      CATCGCCGTGCGCATCGCC-GAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAA 400
consensus_6675#1      C-TCNCCCTNCGCATNTCCCAAAAGGGGGNNGT--------------------------- 386
                      * ** ** * *****  **  *  ****   **                           

consensus_6675#0      CAGCAGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTATGCGGTTAC 460
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCC 520
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TATTGTGAATAAGGGCCCG 539
consensus_6675#1      -------------------