These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT] [+] EMBL AK110904 [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT] consensusID : consensus_668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT] [-] EMBL C91637 [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_668#0 TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTA 60 consensus_668#1 ------------------------------------------------------------ consensus_668#0 GTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCC 120 consensus_668#1 ------------------------------------------------------------ consensus_668#0 CTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCT 180 consensus_668#1 ------------------------------------------------------------ consensus_668#0 TGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTC 240 consensus_668#1 ------------------------------------------------------------ consensus_668#0 TTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGG 300 consensus_668#1 ------------------------------------------------------------ consensus_668#0 TCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCG 360 consensus_668#1 ------------------------------------------------------------ consensus_668#0 GCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTG 420 consensus_668#1 ------------------------------------------------------------ consensus_668#0 TCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGC 480 consensus_668#1 --------------------------------------------------------CTTN 4 ** consensus_668#0 TGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGA 540 consensus_668#1 TTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGA 64 * * *********** **** ***** ** * *** ****** *** ***** *** consensus_668#0 GGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 600 consensus_668#1 G-ATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 123 * ********************************************************** consensus_668#0 TCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTC 660 consensus_668#1 TCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTC 183 ********************* **************************** ********* consensus_668#0 TGAAATCTG--CAGAGGAAG-AGGAATCAAGATCGTTAGCCAGTT-CAAAGATTGTTCTT 716 consensus_668#1 TGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAG 243 ******* ** * *** *** * * *** ** * * * * consensus_668#0 GTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTC---AA 773 consensus_668#1 CCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAG 303 * * * * * * * ** * * *** * ** ** * * consensus_668#0 GAAACTG--GGAACTAATTAGTA----GTAGTAATCTACTAGATTAT------------- 814 consensus_668#1 GAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCA 363 ** * * **** * * * * * * *** * consensus_668#0 ------------------------------------------------------------ consensus_668#1 AATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGG 423 consensus_668#0 ------------------ consensus_668#1 ACGGATCGGTCGTCGATT 441 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||