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Oryza sativa
cluster # 668 cluster # 668       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_668#0 length = 814 sequences # 1  
consensus_668#1 length = 441 sequences # 1  

consensusID : consensus_668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence
                              [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT]

[+] EMBL AK110904             [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT]


>consensus_668#0 TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTA GTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCC CTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCT TGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTC TTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGG TCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCG GCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTG TCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGC TGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGA GGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA TCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTC TGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTT TTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTG GGAACTAATTAGTAGTAGTAATCTACTAGATTAT



consensusID : consensus_668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT]

[-] EMBL C91637               [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT]


>consensus_668#1 CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAA AAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCG CGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGC CTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCC TAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTA GAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGG TCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGG GGGACGGATCGGTCGTCGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_668#0      TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTA 60
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      GTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCC 120
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      CTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCT 180
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTC 240
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGG 300
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCG 360
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      GCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTG 420
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGC 480
consensus_668#1      --------------------------------------------------------CTTN 4
                                                                             **  

consensus_668#0      TGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGA 540
consensus_668#1      TTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGA 64
                     * * *********** **** ***** **    *  *** ****** *** ***** ***

consensus_668#0      GGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 600
consensus_668#1      G-ATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 123
                     * **********************************************************

consensus_668#0      TCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTC 660
consensus_668#1      TCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTC 183
                     ********************* **************************** *********

consensus_668#0      TGAAATCTG--CAGAGGAAG-AGGAATCAAGATCGTTAGCCAGTT-CAAAGATTGTTCTT 716
consensus_668#1      TGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAG 243
                     *******    ** *  *** ***    *  *     ***  **  * * *   *     

consensus_668#0      GTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTC---AA 773
consensus_668#1      CCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAG 303
                        * * * * * * *   **      *    *     ***  *   ** **  *   * 

consensus_668#0      GAAACTG--GGAACTAATTAGTA----GTAGTAATCTACTAGATTAT------------- 814
consensus_668#1      GAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCA 363
                     ** *  *  ****  *    * *    *  * *     ***     *             

consensus_668#0      ------------------------------------------------------------
consensus_668#1      AATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGG 423
                                                                                 

consensus_668#0      ------------------
consensus_668#1      ACGGATCGGTCGTCGATT 441
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)