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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1567 fasta sequence
[CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTCCGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCGCCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGGAGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAGGAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGGACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTCGTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCACGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGACTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTGTATTGCACCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTATGGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATTCCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGACAGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAAGATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAAGGTGGCAGCAACCACAATGCTTTTACGCCTGGTGCTAGTGTTCATGTTCTATCTGGGCCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACTCTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTG-AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTTATGAGCATTTAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTCTTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTATTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTTTAAAAAAAAAAAAAAAA]
[+] EMBL AK058472 [CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTCCGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCGCCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGGAGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAGGAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGGACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTCGTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCACGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGACTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTGTATTGCACCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTATGGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATTCCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGACAGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAAGATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAAGGTGGCAGCAACCACAATGCTTTTACGCCTGGTGCTAGTGTTCATGTTCTATCTGGGCCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACTCTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTG AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTT ]
[-] EMBL CA759248 [ ATGTTCCATC GGGCCCTTTGAAGGCTTCCCTGGTTCCCTCCTGGAAGGGAATCGCAAAAATAAGAAGCCCCCTTTTCAGTTGCCACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTGAAAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCCTTTAACTCTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCCCATGAGGGCTAGATTTGTCGGACAAGGAAGGTCATGTAGAAAACAAGGTTCGAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTTTTATGAGCATTTAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTCTTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTATTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTTTAAAAAAAAAAAAAAAA]
[+] EMBL AA752319 [ TCAAATTGAGGCAGTTGATACTTGATGGTG AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACACCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTC ]
consensusID : consensus_6686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence
[CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTGGTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAGCATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAAGAAATGATTTACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACTCCAGAGTCCCCAGGTTATAGGATAGAACTTATGTTCTATTATTGTGCTGCAATTATTCATGCAACCCAATCTAAGTAAATCAAGTTTAGTTACGATACTAACAATACATAAATTTACTGCTCTAGAAAATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGCCTTTTTTCTTAACAGCCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCCCCACACTATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCCATAAGTTTGTGTTTCTTGTCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGNTGGTATTTTTAGATGCA]
[+] EMBL CA766278 [CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTGGTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAGCATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAAGAAATGATTTACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACTCCAGAGTCCCCAGGTTATAGGATAGAACTTATGTTCTATTATTGTGCTGCAATTATTCATGCAACCCAATCTAAGTAAATCAAGTTTAGTTACGATACTAACAATACATAAATTTACTGCTCTAGAAAATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGCCTTTTTTCTTAACAGCCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCCCCACACTATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCCATAAGTTTGTGTTTCTTGTCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGNTGGTATTTTTAGATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6686#0 CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTC 60
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 CGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCG 120
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 CCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGG 180
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 AGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAG 240
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 GAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGG 300
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 ACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTC 360
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 GTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCA 420
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 CGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGA 480
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 CTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTG 540
consensus_6686#1 --------CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTG 52
* * * * * ** * **** * *** * ***** **
consensus_6686#0 TATTGCA---CCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTAT 597
consensus_6686#1 GTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAG 112
* * * * * ******* * * * ** * * *** ****
consensus_6686#0 GGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATT 657
consensus_6686#1 CATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAA--GAAATGATTT 170
* * * * * * * ** * * * * ** *** **
consensus_6686#0 CCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGAC 717
consensus_6686#1 ACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACT-----CCAGAGTCCCCAGGT 225
** * * *** * ** *** * * * * **** *
consensus_6686#0 AGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAA 777
consensus_6686#1 TATAGGATAGAACTTATGTTCTATTATTGTGCTGC--AATTATTCATGCAACCCAATCTA 283
* * *** *** ** * ** * * **** ***** * *
consensus_6686#0 GATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAA 837
consensus_6686#1 AGT----AAATCAAGTTTAGTTACGATACTAACA-ATACATAAATTTACTGCTCTAGAAA 338
* ** *** * * * * * * ** * * * * ** ** *** ***
consensus_6686#0 G-GTGGCAGCAACCACAATGCTT-TTACGCCTGGTGCTAGTGTTCA-TGTTCTATCTGGG 894
consensus_6686#1 ATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGC 398
** ** * **** * * * * * * * *** * *
consensus_6686#0 CCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACT 954
consensus_6686#1 CTTTTTT----CTTAACAG---CCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCC 451
* **** *** ** * * * * *** ** * ** ** *
consensus_6686#0 CTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAG 1014
consensus_6686#1 CCACACT--ATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCC 509
* ** * * * ** *** * ** * * * *** *** *
consensus_6686#0 GCA-GTTGATACTTGATGGTGAAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATAC 1073
consensus_6686#1 ATAAGTTTGTGTTTCTTG-TCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATAC 568
* *** * ** ** * * * ********************************
consensus_6686#0 AGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTG 1133
consensus_6686#1 AGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTG 628
************************************************************
consensus_6686#0 ACAAAACTGTTAGCATACGGG-CTACCTCAAGAACTGACCTGAGTTACATGACCACATGA 1192
consensus_6686#1 ACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGA 688
********************* **************************************
consensus_6686#0 GGGCTAGATTT-GTCGGACAAGG-AAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGG 1250
consensus_6686#1 GGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGG 748
*********** *********** ************************************
consensus_6686#0 TTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTAT 1310
consensus_6686#1 NTGGTATTTTTAGATGCA------------------------------------------ 766
*****************
consensus_6686#0 CAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTTATGAGCATT 1370
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 TAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTC 1430
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 TTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTA 1490
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 TTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTT 1550
consensus_6686#1 ------------------------------------------------------------
consensus_6686#0 TAAAAAAAAAAAAAAAA 1567
consensus_6686#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||