cluster # 6689

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Oryza sativa
cluster # 6689 cluster # 6689 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6689#0 length = 1562 sequences # 3

consensus_6689#1 length = 478 sequences # 1

consensusID : consensus_6689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1562
fasta sequence

                              [GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGG-AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA-GGATGACAGCGTTT-CAGGATCAGTANGTGACATGTTTGAACCTTC-CCAACTGAAAGA-CCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAACCTGGTGAGCGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACCTGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATCTCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGGAAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCATTCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCGCATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAGCCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAATTGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTGGCAGAAGGCCTGAGGGCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATATATCTGACAACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAAGTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCAAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCCTGACTGCT]

[+] EMBL AA752718             [GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGG AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA GGATGACAGCGTTT CAGGATCAGTANGTGACATGTTTGAACCTTC CCAACTGAAAGA CCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AA754159             [                  TCGTGCCGAATTCGGCACGAGAAAACCAGCACAAAGCACATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCACAACGTGGAATTACTCTGTTGCCACATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGGAAACATTTTTGATAACACATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTACTACAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGCCGA TCTA AAAATATGCCT GACCC AATCTCCTGAA ATTACCACCAATCACCCCGTTTCCAGGATtcact                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK059066             [                                               CACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAGAGACACTGGG AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAGAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA GGATGACAGCGTTT CAGGATCAGTAGGTGACATGTTTGAACCTTCACCAACTGAAAGAGCCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATT CGGGCAGCATAATAACCCTAACCTGGTGAGCGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACCTGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATCTCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGGAAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCATTCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCGCATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAGCCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAATTGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTGGCAGAAGGCCTGAGGGCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATATATCTGACAACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAAGTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCAAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCCTGACTGCT]




>consensus_6689#0
GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATC
AAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAG
AAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTA
ACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGGAACATTTTTG
ATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTC
CAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTC
TAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCAGGATGACAGCGTTTCAGGAT
CAGTANGTGACATGTTTGAACCTTCCCAACTGAAAGACCGAACAGGAAACTACGCTGGTG
TCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAACCTGGTGAG
CGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACC
TGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATC
TCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGG
AAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCAT
TCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCG
CATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAG
CCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAAT
TGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCC
GAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTGGCAG
AAGGCCTGAGGGCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTT
AGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATATATCTGACAACAGATAGGAAATG
TAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAAGTG
GCCGTGTGTGTTTTGGCTGTTTTATTGTTCCAAGAAGGAACTGACTCAGAAATCATCCGC
ATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTTCTTA
TGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGC
AAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTG
GTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCCTGACTG
CT

consensusID : consensus_6689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCTTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCCTGCAGCCGATTGCGCAGAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAAGTGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGCTGTGTGGTCAACAAAAAAAAAA]

[+] EMBL BI806612             [GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCTTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCCTGCAGCCGATTGCGCAGAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAAGTGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGCTGTGTGGTCAACAAAAAAAAAA]




>consensus_6689#1
GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCTTGAAGCCGAACCCTGATCGC
TCTGTCGCGAAGAACTCATCAAGGCGACCCTGCAGCCGATTGCGCAGAAGGCCTGAGGCG
CCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTC
GAGTTGAAGAATAGGAGCATATATGATATCTGACACAGATAGGAAATGTAACACGATATG
GTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAAGTGCCGTGTGTGTTT
TGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTT
TTCCTTCTTTCTAGACTCAATCATTGACGTGTGTTGGGTTTTTCTTATGTACTCTAATTC
AAGTATTTCGAACAGAATGGTATTTATGGATTGTGCTGTGTGGTCAACAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6689#0      GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATC 60
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      AAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAG 120
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      AAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTA 180
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      ACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGGAACATTTTTG 240
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      ATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTC 300
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      CAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTC 360
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCAGGATGACAGCGTTTCAGGAT 420
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      CAGTANGTGACATGTTTGAACCTTCCCAACTGAAAGACCGAACAGGAAACTACGCTGGTG 480
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAACCTGGTGAG 540
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      CGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACC 600
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATC 660
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGG 720
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      AAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCAT 780
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCG 840
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      CATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAG 900
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      CCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAAT 960
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCC 1020
consensus_6689#1      ------------GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCT-TGAAGCC 47
                                  ************************** ************* *******

consensus_6689#0      GAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTG-GCA 1079
consensus_6689#1      GAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACC-CTGCAGCCGATTGCGCA 106
                      ****************************************** ************* ***

consensus_6689#0      GAAGGCCTGAGG-GCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCAT 1138
consensus_6689#1      GAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCAT 166
                      ************ *********   ***********************************

consensus_6689#0      TTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATAT-ATATCTGACAACAGATAGGAA 1197
consensus_6689#1      TTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACA-CAGATAGGAA 225
                      ************************************** ********** **********

consensus_6689#0      ATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAA 1257
consensus_6689#1      ATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAA 285
                      ********************************************      **********

consensus_6689#0      GTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCA-AGAAGGAACTGACTCAGAAATCAT 1316
consensus_6689#1      GTG-CCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCAT 344
                      *** ******************************* ************************

consensus_6689#0      CCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTT 1376
consensus_6689#1      CCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTG-TGTTGGGTTTTT 403
                      *********************************************** ************

consensus_6689#0      CTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTG 1436
consensus_6689#1      CTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTG-CTGTGTG 462
                      **************************************************** *******

consensus_6689#0      GT--GCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTAT 1494
consensus_6689#1      GTCAACAAAAAAAAAA-------------------------------------------- 478
                      **   ***  *                                                 

consensus_6689#0      ATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCC 1554
consensus_6689#1      ------------------------------------------------------------
                                                                                  

consensus_6689#0      TGACTGCT 1562
consensus_6689#1      --------