These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1638 fasta sequence [AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATAACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAACCAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCGCCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACCCAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACGACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGGCTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCGACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTAGTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGAAGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCGCATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGGGAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACAAGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTTCACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCACGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCCGCNNCGCNCNACCCCACCCCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTAGGGGGCCGATATTACCCCCCT] [+] EMBL AK109094 [AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATAACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAACCAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCGCCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACCCAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACGACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGGCTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCGACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTAGTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGAAGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCGCATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGGGAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACAAGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTTCACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCACGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCC ] [+] EMBL CA757334 [ CATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTTTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATGAGAGTGTCATATCTAGGTCCCTGAACTCTTAANATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAAAAANAACAGCNNCGCNCNACCCCACCCCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTAGGGGGCCGATATTACCCCCCT] consensusID : consensus_6699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACAAGAAAAAATCAGAGGTAAGAGGGGGAGGCAAAGCGTCTGTTCAAGTCAGAGACTTCACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGCAGAATAGTGGATTGACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCACACGCAGCATCAATCGCCCAAAGTGAACCTGGGGGAGAAGATCATGGCTTTGCAGCAGATTATGTCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGTGGATCAATTGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAGGTATCTGATGAGTTTTATCATATCNTACNNNNNNTGTGTTNNNNNNAATGNNNNNNNNATNGAT] [+] EMBL CF196134 [TGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACAAGAAAAAATCAGAGGTAAGAGGGGGAGGCAAAGCGTCTGTTCAAGTCAGAGACTTCACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGCAGAATAGTGGATTGACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCACACGCAGCATCAATCGCCCAAAGTGAACCTGGGGGAGAAGATCATGGCTTTGCAGCAGATTATGTCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGTGGATCAATTGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAGGTATCTGATGAGTTTTATCATATCNTACNNNNNNTGTGTTNNNNNNAATGNNNNNNNNATNGAT] consensusID : consensus_6699#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CACGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCACTNGGGTTTAGNNTGTACCAAAATATTNGTTTCTNCNGANAAACTGAAGGNNCTCANANTGCTCNCATCATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACCCCCANCACCGTCTACNAAAATNGCCACTTCCATTTTGGTCCACCACCATAGGAATNTANGATNCACNCNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCANAACCCGAGAAGNACCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAANCANCCGCGGTGTGCGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCCGTGACACANCCTTCTCATCCTCNCCGGNGGCCGACGAACACTCCCCAACGANCACCANGCGGTCAC] [+] EMBL AA753082 [CACGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCACTNGGGTTTAGNNTGTACCAAAATATTNGTTTCTNCNGANAAACTGAAGGNNCTCANANTGCTCNCATCATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACCCCCANCACCGTCTACNAAAATNGCCACTTCCATTTTGGTCCACCACCATAGGAATNTANGATNCACNCNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCANAACCCGAGAAGNACCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAANCANCCGCGGTGTGCGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCCGTGACACANCCTTCTCATCCTCNCCGGNGGCCGACGAACACTCCCCAACGANCACCANGCGGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6699#0 AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATA 60 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 ACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAAC 120 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCG 180 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACC 240 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACG 300 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 ACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGG 360 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCG 420 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 ACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTA 480 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 GTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGA 540 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 AGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCG 600 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGG 660 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 GAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACG 720 consensus_6699#1 --------------------------------------TGCATGAGAACTTCTCCGGACG 22 consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 TCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAA 780 consensus_6699#1 TCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAA 82 consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 GGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACA 840 consensus_6699#1 GGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACA 142 consensus_6699#2 ----------------------------------------------------------CA 2 ** consensus_6699#0 AGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTT 900 consensus_6699#1 AGAAAAA---ATCAGAGGTAAGAGGGGGAGGCAAAGCGTC--TGTTCAAGTCAGAGACTT 197 consensus_6699#2 CGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCA----CTNGGGTTTAGNNTGT 58 ** * *** * * * ** * ** * consensus_6699#0 CACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCA 960 consensus_6699#1 CACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGC-AGAATAGTGGATT- 255 consensus_6699#2 ACCAAAATAT-TNGTTTCTNCNG----ANAAACTGAAGGNNC--TCANANTGCTCNCATC 111 ** * * * ** * * ** * consensus_6699#0 CGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGG 1020 consensus_6699#1 -GACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCA---CACGCAG 311 consensus_6699#2 ATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACC---CCCANCACCG------TCTA 162 * * * ** * * ** * * consensus_6699#0 AAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATA 1080 consensus_6699#1 CATCAATCGCCCAAAGTGAACCTGGGGGAGAA-GATCATGGCTTTGCAGCAGAT--TATG 368 consensus_6699#2 CNAAAATNGCC-ACTTCCATTTTGGTCCACCA---CCATAGGAATNTANGATNC---ACN 215 ** ** * * * * * * * * * consensus_6699#0 TGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAG 1140 consensus_6699#1 TCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTG------GAAACCATAACCTAC 422 consensus_6699#2 CNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTA----TATTTCANAACCCGA 271 * ** * * * ** consensus_6699#0 GTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCC-CTG-TTTCCTGGACCTC 1198 consensus_6699#1 ATC---AAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGT 479 consensus_6699#2 GAA--GNACCGGAGCCACGGGCTGGTCGCTGCAGCTTC-TCCTCCACTTCACCAANCANC 328 ** * * *** *** * ** * consensus_6699#0 TCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCT-CCGGCGTACAGGAACTACT 1257 consensus_6699#1 GGATCAAT--TGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAG 537 consensus_6699#2 CGCGGTGTG-CGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCC 387 * * * * * * * * * consensus_6699#0 TTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGT 1317 consensus_6699#1 GTATCTGATGAGTTTTAT-CATATCNTACNNNNNNTG----TGTTNNNNNNAATGNNNNN 592 consensus_6699#2 GTGACACANCCTTCTCAT-CCTCNCCGGNGGCCGACG----AACACTCCCCAACGANCAC 442 * * * ** * * * consensus_6699#0 GCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGT 1377 consensus_6699#1 NNNATNGAT--------------------------------------------------- 601 consensus_6699#2 CANGCGGTCAC------------------------------------------------- 453 * consensus_6699#0 TATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGT 1437 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTT 1497 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 TTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCCGCNNCGCNCNACCCCACC 1557 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 CCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTA 1617 consensus_6699#1 ------------------------------------------------------------ consensus_6699#2 ------------------------------------------------------------ consensus_6699#0 GGGGGCCGATATTACCCCCCT 1638 consensus_6699#1 --------------------- consensus_6699#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||