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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_67#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2022 fasta sequence
[CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAGTAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCTGAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGAGACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGTGTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAGCTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTGTACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCAGTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACACACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAACCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTGACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCAAAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATATATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTTGATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATGTCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAAGACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGCATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATCTGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCAGCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGATGCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAATATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTTGTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAACGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGGACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCAGCGTCTACCGGATGATGAAGCATTGAAGTGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAACTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATCATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTGCTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC]
[+] EMBL AK121391 [CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAGTAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCTGAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGAGACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGTGTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAGCTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTGTACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCAGTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACACACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAACCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTGACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCAAAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATATATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTTGATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATGTCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAAGACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGCATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATCTGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCAGCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGATGCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAATATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTTGTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAACGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGGACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCAGCGTCTACCGGATGATGAAGCATTGAAGTGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAACTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATCATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTGCTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC]
consensusID : consensus_67#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAACTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATCATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTANTTNTTCGCTTTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCGNTGGNGNNGCTTCAACTTTTTCGTCCCATGAA]
[+] EMBL CA765353 [GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAACTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATCATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTANTTNTTCGCTTTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCGNTGGNGNNGCTTCAACTTTTTCGTCCCATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_67#0 CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAG 60
consensus_67#1 ------------------------------------------------------------
consensus_67#0 TAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCT 120
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGA 180
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGT 240
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAG 300
consensus_67#1 ------------------------------------------------------------
consensus_67#0 CTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTG 360
consensus_67#1 ------------------------------------------------------------
consensus_67#0 TACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCA 420
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACA 480
consensus_67#1 ------------------------------------------------------------
consensus_67#0 CACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAA 540
consensus_67#1 ------------------------------------------------------------
consensus_67#0 CCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTG 600
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCA 660
consensus_67#1 ------------------------------------------------------------
consensus_67#0 AAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATAT 720
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTT 780
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATG 840
consensus_67#1 ------------------------------------------------------------
consensus_67#0 TCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAA 900
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGC 960
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATC 1020
consensus_67#1 ------------------------------------------------------------
consensus_67#0 TGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCA 1080
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGAT 1140
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAAT 1200
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTT 1260
consensus_67#1 ------------------------------------------------------------
consensus_67#0 GTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAA 1320
consensus_67#1 ------------------------------------------------------------
consensus_67#0 CGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGG 1380
consensus_67#1 ------------------------------------------------------------
consensus_67#0 ACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGC 1440
consensus_67#1 ------GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGC 54
******************************************************
consensus_67#0 GCACAACAATTAACAGGCTGATGCA-GCGTCTACCGGATGATGAAGCATTGAAGTGTATA 1499
consensus_67#1 GCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATA 114
************************* *** ************************ *****
consensus_67#0 GGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCA 1559
consensus_67#1 GGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCA 174
************************************************************
consensus_67#0 AGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCT 1619
consensus_67#1 AGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCT 234
************************************************************
consensus_67#0 CGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTT 1679
consensus_67#1 CGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTT 294
**************** *******************************************
consensus_67#0 GGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCC 1739
consensus_67#1 GGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCC 354
************************************************************
consensus_67#0 AACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAA 1799
consensus_67#1 AACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAA 414
************************************** * **************** **
consensus_67#0 CTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATC 1859
consensus_67#1 CTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATC 474
**************** * *************************** *** **** ****
consensus_67#0 ATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGT 1919
consensus_67#1 ATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGT 534
***** *********** *****************************************
consensus_67#0 ATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTG 1979
consensus_67#1 ANTTNTTCGCT---TTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCG 591
* ** **** * ** * * * * * * * * * * * * *
consensus_67#0 CTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC 2022
consensus_67#1 NTGGNGNNGCTTCAACTTTTTCGTCCCATGAA----------- 623
* *** ** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||