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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2005 fasta sequence
[CTCTCCTCTAACCCCCTCCTCTCTCCCTTCTCCATCGACACGGAAAGCCTCCCCCCTCTCCTCCTCCCCGAAAAGAAAAAAAAAAAACGACGAGGAGGAGGAGGAGAAAAAAAAAATAAATTAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATGCCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATGTGAGTAGCGATGCTGGCCATGCTGAGCCATCTTGCAGCACACCTGCTCATCATCAGGTTTTCCGCCCTGTTACTCGGTCTATGACCCGTAAGCCTACTGCTGCTGCTGCTGCTTCATCTGATGTGAAGGGAGGAGAATCTGCTAGTACAAGCAAGCGTAGAGATTCTACAGACCCTTGCTTTAACACCCAATCTGCTGCTGCAAGACCATCTGTAACCCGTGTCCGCACCCCTCATAAAGTGGCTTCATCTGCTTGGAAGCCCCTTACCCAGCCTATTGTTATGAGTGAAGACCTGAAGCGGGCAAGCGTTCCTTCAACCAATCCTTCTGCCAAGCGCTCCAGAGTTGCTTCGTCTCAAGCTGCTGAAGATAGCCCAACTGTTCACAGAGGCAAAAAGAGAAATGAAGAAAGCGCGAGCAAAGGTGATCAGTTGGATGGGGCAGTCATCCCATCTCCATCAAAGAAGCTGCAAACGGGCAAGAGCCCTTCTGATGTACTTCCAAAAAGGAAACCAACTATCAGAAATAAGGACGGTAAATTAGCTGCTCCACTGTCTATGGTTAAGTTGGAGACTGAAAGCGGAGAGAGTTCTGTCATTGCTTCCTCAAAAATTGGTCCTGCTACTACAAATGACAATTGTCAGTCAGCTGAACTTGCACAGCAGCTGCAGCTTGATACAAAAAATAATTCCAATGATATCATTACAGAAGCTATTGCCTATGGAACAAACCAAGCTGATCTGCTTGTTGCTCCAGTCACTACTGATGCTATTGCCAGCGGATCAAGCCAAGTCAATCTGTCGGCTTTTCCAGTCACTGCAGAAGCTATACCCAACAGAACTCACCAAGTCAACCACTCAGCTGGTCCATTAAATATAAAAGCTATGATCAACAGAACAAGCCTTGTTAATAAACCAGTTGCTCCAGTCAATGCCAAAGCTATTGCCAACAGAGCACAGCAAGTTGCTGCACACAATAAGTTGCCTTCTCCGGTCATTGCAGCTCCCAGACAAAACTTGCAAGATGATCTTCAAAGGAAGCTTGCTAAGTTACTCATTGCTAGGAAACAGCCCAGTGGCCAGGCTGGTGCAACTGCTCCATTGGTCTCACCGAAACTAGAGATCGGGAAAGCTAAGGGCTCGTCATCCAATGTTCTCTCAGATCCTGCTTACGCGAACGTGAAGGCATTGTTGATCAAGCAGCAAGAACAGCTGCTGCAGCAATTTAAATCGGCAAATTCACAACCGCAGGTCCACATCAAAGGACCAGCTCTGACGGACAAGGATGAGGCGCCACCAGTTGAGCCA-TTGGGGACAAGGTGCCAGCTGTGCAAGCTCGATATAGCATTCAGGCCTCAAGGTGACGATGCTCGCGACAATGCTCCTCCAGTCGCGGCCGTCCTGGGCTGCCACCATGCATTCCATAGCAGCTGCATTGAGGCCATTTACGGCCTCGCTGAGCCTTCCCAGTGTATTGGCTGCCTTGATTCTGCCAAGGCCTGACGTTGCACTGATCAACGATCAGTAGCAGCAGCATCGATTTGTACCGGATGAACCATGATATAGGTTACAGGTTTTCGTTTTAGGATACAATGTAGGTTGGGAGGTTGAGGTCTCAACAATAATCTGTTGGTAGAAATTTTCTGGGTCAATTATGGCTCAAGTCGGAGTTGGATAGTCCCTTTTTCTTTAC-CTGACTGCTTTAGATGATGTAATTAGCAATCTCTGGGTCTTGATAGTGAGATGGATCGTTTGCACAAAAAAAAAA]
[+] EMBL AK073661 [CTCTCCTCTAACCCCCTCCTCTCTCCCTTCTCCATCGACACGGAAAGCCTCCCCCCTCTCCTCCTCCCCGAAAAGAAAAAAAAAAAACGACGAGGAGGAGGAGGAGAAAAAAAAAATAAATTAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATGCCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATGTGAGTAGCGATGCTGGCCATGCTGAGCCATCTTGCAGCACACCTGCTCATCATCAGGTTTTCCGCCCTGTTACTCGGTCTATGACCCGTAAGCCTACTGCTGCTGCTGCTGCTTCATCTGATGTGAAGGGAGGAGAATCTGCTAGTACAAGCAAGCGTAGAGATTCTACAGACCCTTGCTTTAACACCCAATCTGCTGCTGCAAGACCATCTGTAACCCGTGTCCGCACCCCTCATAAAGTGGCTTCATCTGCTTGGAAGCCCCTTACCCAGCCTATTGTTATGAGTGAAGACCTGAAGCGGGCAAGCGTTCCTTCAACCAATCCTTCTGCCAAGCGCTCCAGAGTTGCTTCGTCTCAAGCTGCTGAAGATAGCCCAACTGTTCACAGAGGCAAAAAGAGAAATGAAGAAAGCGCGAGCAAAGGTGATCAGTTGGATGGGGCAGTCATCCCATCTCCATCAAAGAAGCTGCAAACGGGCAAGAGCCCTTCTGATGTACTTCCAAAAAGGAAACCAACTATCAGAAATAAGGACGGTAAATTAGCTGCTCCACTGTCTATGGTTAAGTTGGAGACTGAAAGCGGAGAGAGTTCTGTCATTGCTTCCTCAAAAATTGGTCCTGCTACTACAAATGACAATTGTCAGTCAGCTGAACTTGCACAGCAGCTGCAGCTTGATACAAAAAATAATTCCAATGATATCATTACAGAAGCTATTGCCTATGGAACAAACCAAGCTGATCTGCTTGTTGCTCCAGTCACTACTGATGCTATTGCCAGCGGATCAAGCCAAGTCAATCTGTCGGCTTTTCCAGTCACTGCAGAAGCTATACCCAACAGAACTCACCAAGTCAACCACTCAGCTGGTCCATTAAATATAAAAGCTATGATCAACAGAACAAGCCTTGTTAATAAACCAGTTGCTCCAGTCAATGCCAAAGCTATTGCCAACAGAGCACAGCAAGTTGCTGCACACAATAAGTTGCCTTCTCCGGTCATTGCAGCTCCCAGACAAAACTTGCAAGATGATCTTCAAAGGAAGCTTGCTAAGTTACTCATTGCTAGGAAACAGCCCAGTGGCCAGGCTGGTGCAACTGCTCCATTGGTCTCACCGAAACTAGAGATCGGGAAAGCTAAGGGCTCGTCATCCAATGTTCTCTCAGATCCTGCTTACGCGAACGTGAAGGCATTGTTGATCAAGCAGCAAGAACAGCTGCTGCAGCAATTTAAATCGGCAAATTCACAACCGCAGGTCCACATCAAAGGACCAGCTCTGACGGACAAGGATGAGGCGCCACCAGTTGAGCCA TTGGGGACAAGGTGCCAGCTGTGCAAGCTCGATATAGCATTCAGGCCTCAAGGTGACGATGCTCGCGACAATGCTCCTCCAGTCGCGGCCGTCCTGGGCTGCCACCATGCATTCCATAGCAGCTGCATTGAGGCCATTTACGGCCTCGCTGAGCCTTCCCAGTGTATTGGCTGCCTTGATTCTGCCAAGGCCTGACGTTGCACTGATCAACGATCAGTAGCAGCAGCATCGATTTGTACCGGATGAACCATGATATAGGTTACAGGTTTTCGTTTTAGGATACAATGTAGGTTGGGAGGTTGAGGTCTCAACAATAATCTGTTGGTAGAAATTTTCTGGGTCAATTATGGCTCAAGTCGGAGTTGGATAGTCCCTTTTTCTTTAC CTGACTGCTTTAGATGATGTAATTAGCAATCTCTGGGTCTTGATAGTGAGAT ]
[+] EMBL BM038881 [ tTCCACATCAAAGGACCAGCTCTGACGGACAAGGATGAGGCGCCACCAGTTGAGCCACTTGGGGACAAGGTGCCAGCTGTGCAAGCTCGATATAGCATTCAGGCCTCAAGGTGACGATGCTCGCGACAATGCTCCTCCAGTCGCGGCCGTCCTGGGCTGCCACCATGCATTCCATAGCAGCTGCATTGAGGCCATTTACGGCCTCGCTGAGCCTTCCCAGTGTATTGGCTGCCTTGATTCTGCCAAGGCCTGACGTTGCGCTGATCAACGATCAGTAGCAGCAGCATCGATTTGTACCGGATGAACCATGATATAGGTTACAGGTTTTCGTTTTAGGATACCATGTAGCTTGGGA GTTGAGGTCTCAACAATAATCTGTTGGTAGAAATTTTCTGGGTCAATTATGGCTCAAGTCGGAGTTGGATAGTCCCTTTTTCTTTACACTGACTGCTTTAGATGATGTAATTA CAATCTCTGGGTCTTGATAGTGAGATGGATCGTTTGCACAAAAAAAAAA]
[+] EMBL CB682690 [ ACGATGCTCCCGACAATGCTCCTCCAGTCGCGGCCGTCCTGGGCTGCCACCATGCATTCCATAGCAGCTGCATTGAGGCCATTTACGGCCTCGCTGAGCCTTCCCAGTGTATTGGCTGCCTTGATTCTGCCAAGGCCTGACGTTGCACTGATCAACGATCAGTAGCAGCAGCATCGATTTGTACCGGATGAACCATGATATAGGTTACAGGTTTTCGTTTTAGGATACAATGTAGGTTGGGAGGTTGAGGTCTCAACAATAATCTGTTGGTAGAAATTTTCTGGGTCAATTATGGCTCAAGTCGGAGTTGGATAGTCCCTTTTTCTTTAC CTGACTGCTTTAGATGATGTAATTAGCAATCTCTGGGTCTTGATAGTGAGATGG ]
consensusID : consensus_6700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[TAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATGCCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATGGTGAGAACCCCCCCGCCCAATCCTCCTCCGCGTGGGGGTTCTTCGTGTTTTTTTTTTGTTAGGATGTTTGGTTCGCGTGGATTCGTTGCGGCCGCGGGCTGGTGGTAATTCCGATGCATTGTTGGGTTGTGTTGATGGCTTTGGTTCGGGAGATTCCGGTTCTTGGTTCGGGGGGGATTTCGCGTAGATGTGCCCCACGGTTTAGTTGCGACTTGAGTACGGATTGCTCGAATCATCCATGATCGGATCCTGATGTCGCGTTAATCGAGTGGTTTTAGTACTGGGAGTAGAGAAATGTCATCAGGAAAGACGCAGCCGGGCCAGAATTTTTTTTTCTTTTTTTTTGGCTTTGGGAATTCGGCACGCGGCTCCACAGCGGCCGCTATGTAGGGATAATTCAGAAGTAACTGCTGTTGTTTTGATTGTTATGCTATGGAATCTTGTAAAGATGGGCAGGTGTTTCTTTATTTGTGTTGGATTGGGGAGCTACATAATCAAATGCCTTTCTTTTGATGGTCTGTTTCACTAAAAGAAAAAATATCATGCTGCTGGGTTTCCTTTCCAAAGAAATGTAATCTGTTCCTTGAGAATTGGCTGTATGAACTGTTAATTGGTGGCAATCAAACTGCTCT]
[+] EMBL AK107695 [TAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATGCCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATGGTGAGAACCCCCCCGCCCAATCCTCCTCCGCGTGGGGGTTCTTCGTGTTTTTTTTTTGTTAGGATGTTTGGTTCGCGTGGATTCGTTGCGGCCGCGGGCTGGTGGTAATTCCGATGCATTGTTGGGTTGTGTTGATGGCTTTGGTTCGGGAGATTCCGGTTCTTGGTTCGGGGGGGATTTCGCGTAGATGTGCCCCACGGTTTAGTTGCGACTTGAGTACGGATTGCTCGAATCATCCATGATCGGATCCTGATGTCGCGTTAATCGAGTGGTTTTAGTACTGGGAGTAGAGAAATGTCATCAGGAAAGACGCAGCCGGGCCAGAATTTTTTTTTCTTTTTTTTTGGCTTTGGGAATTCGGCACGCGGCTCCACAGCGGCCGCTATGTAGGGATAATTCAGAAGTAACTGCTGTTGTTTTGATTGTTATGCTATGGAATCTTGTAAAGATGGGCAGGTGTTTCTTTATTTGTGTTGGATTGGGGAGCTACATAATCAAATGCCTTTCTTTTGATGGTCTGTTTCACTAAAAGAAAAAATATCATGCTGCTGGGTTTCCTTTCCAAAGAAATGTAATCTGTTCCTTGAGAATTGGCTGTATGAACTGTTAATTGGTGGCAATCAAACTGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6700#0 CTCTCCTCTAACCCCCTCCTCTCTCCCTTCTCCATCGACACGGAAAGCCTCCCCCCTCTC 60
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CTCCTCCCCGAAAAGAAAAAAAAAAAACGACGAGGAGGAGGAGGAGAAAAAAAAAATAAA 120
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TTAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATG 180
consensus_6700#1 -TAGGGCTTTCTCCTCGTGCTCCCTGCGATTGCGCCGCCCCCGATTCGCCCAATCCAATG 59
***********************************************************
consensus_6700#0 CCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATGTG 240
consensus_6700#1 CCGCGCGCCTCCAGGGCCCCGAATCCCCCTCCCCCCGCCGCCGCCGCCGCGGAGAATG-- 117
**********************************************************
consensus_6700#0 AGTAGCGATGCTGGCCATGCTGAGCCATCTTGCAGCACACCTGCTCATCATCAGGTTTTC 300
consensus_6700#1 ----GTGAGAACCCCCCCGCCCAATCCTCCTCC-GCGTGGGGGTTCTTCGT---GTTTTT 169
* ** ** ** * * ** * * ** * ** ** * *****
consensus_6700#0 CGCCCTGTTACTCGGTCTATGACCCGTAAGCCTACTGCTGCTGC----TGCTGCTTCATC 356
consensus_6700#1 T-TTTTGTTAGGATGTTTGGTTCGCGTGGATTCGTTGCGGCCGCGGGCTGGTGGTAATTC 228
***** ** * * *** *** ** ** ** ** * **
consensus_6700#0 TGATGTGAAGGGAGGAGAATCTGCTAGTACAAGCAAGCGTAGAGATTCTACAGACCCTTG 416
consensus_6700#1 CGATGCATTGTTGGGTTGTGTTGATGGCTTTGGTTCG---GGAGATTCC---GGTTCTTG 282
**** * ** ** * * * * ******* * ****
consensus_6700#0 CTTTAACACCCAATCTGCTGCTGCAAGACCATCTGTA-ACCCGTGTCCGCACCCCTCATA 475
consensus_6700#1 GTTCGGGGGGGATTTCGCGTAGATGTGCCCCACGGTTTAGTTGCGACTTGAGTACGGATT 342
** * * ** * ** * ** * * * * * * **
consensus_6700#0 AAGTGGCTTCATCTGCTTGGAAGCCCCTTACCCAGCCTATTGTTATGAGTGAAGACCTGA 535
consensus_6700#1 GCTCGAATCATCCATGATCGGATCCTGATGTCGCGTTAATCGAGTGGTTTTAGTACTGGG 402
* * * * * * ** * * * ** * * * * ** *
consensus_6700#0 AGCGGGCAAGCGTTCCTTCAACCAATCCTTCTGCCAAGCGCTCCAGAGTTGCTTCGTCTC 595
consensus_6700#1 AGTAGAGAAATGTCATCAGGAAAGACGCAGCCGGGCCAGAATTTTTTTTTCTTTTTTTTT 462
** * ** ** * * * * * * ** ** * *
consensus_6700#0 AAGCTGCTGAAGATAGCCCAACTGTTCACAGAGGCAAAAAGAGAAATGAAGAAAGCGCGA 655
consensus_6700#1 GGCTTTGGGAATTCGGCACGCGGCTCCACAGCGGCCGCTATGTAG--GGATAATTCAGAA 520
* *** ** * * ***** *** * * * * ** * *
consensus_6700#0 GCAAAGGTGATCAGTTGGATGGGGCAGTCATCCCATCTCCATCAAAGAAGCTGCAAACGG 715
consensus_6700#1 GTAACTGCTGTTGTTTTGATTGTTATGCTATGGAATCTTG-----------TAAAGATGG 569
* ** * * ** *** * * ** **** * * * **
consensus_6700#0 GCAAGAGCCCTTCTGATGTACTTCCAAAAAGGAAACCAACTATCAGAAATAAGGACGGTA 775
consensus_6700#1 GCAGGTGTTTCTTT-ATTTGTGTTGGATTGGGGAGCTACATAATCAAATGCCTTTCTTTT 628
*** * * * * ** * * * ** * * * ** ** * *
consensus_6700#0 AATTAGCTGCTCCACTGTCTATGGTTAAGTTGGAGACTGAAAG------CGGAGAGAGTT 829
consensus_6700#1 GATGGTCTGTTTCACTAA--AAGAAAAAATATCATGCTGCTGGGTTTCCTTTCCAAAGAA 686
** *** * **** * * ** * * *** * * **
consensus_6700#0 CTGTCATTGCTTCCTCAAAAATTGGTCCTGCTACTACAAATGACAATTGTCAGTCAG-CT 888
consensus_6700#1 ATGTAATCTGTTCCTTGAGAATTGGCTGTATGA--ACTGTTAATTGGTGGCAATCAAACT 744
*** ** ***** * ****** * * ** * * ** ** *** **
consensus_6700#0 GAACTTGCACAGCAGCTGCAGCTTGATACAAAAAATAATTCCAATGATATCATTACAGAA 948
consensus_6700#1 GCTCT------------------------------------------------------- 749
* **
consensus_6700#0 GCTATTGCCTATGGAACAAACCAAGCTGATCTGCTTGTTGCTCCAGTCACTACTGATGCT 1008
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 ATTGCCAGCGGATCAAGCCAAGTCAATCTGTCGGCTTTTCCAGTCACTGCAGAAGCTATA 1068
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CCCAACAGAACTCACCAAGTCAACCACTCAGCTGGTCCATTAAATATAAAAGCTATGATC 1128
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AACAGAACAAGCCTTGTTAATAAACCAGTTGCTCCAGTCAATGCCAAAGCTATTGCCAAC 1188
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 AGAGCACAGCAAGTTGCTGCACACAATAAGTTGCCTTCTCCGGTCATTGCAGCTCCCAGA 1248
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CAAAACTTGCAAGATGATCTTCAAAGGAAGCTTGCTAAGTTACTCATTGCTAGGAAACAG 1308
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CCCAGTGGCCAGGCTGGTGCAACTGCTCCATTGGTCTCACCGAAACTAGAGATCGGGAAA 1368
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GCTAAGGGCTCGTCATCCAATGTTCTCTCAGATCCTGCTTACGCGAACGTGAAGGCATTG 1428
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TTGATCAAGCAGCAAGAACAGCTGCTGCAGCAATTTAAATCGGCAAATTCACAACCGCAG 1488
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GTCCACATCAAAGGACCAGCTCTGACGGACAAGGATGAGGCGCCACCAGTTGAGCCATTG 1548
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GGGACAAGGTGCCAGCTGTGCAAGCTCGATATAGCATTCAGGCCTCAAGGTGACGATGCT 1608
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CGCGACAATGCTCCTCCAGTCGCGGCCGTCCTGGGCTGCCACCATGCATTCCATAGCAGC 1668
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TGCATTGAGGCCATTTACGGCCTCGCTGAGCCTTCCCAGTGTATTGGCTGCCTTGATTCT 1728
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GCCAAGGCCTGACGTTGCACTGATCAACGATCAGTAGCAGCAGCATCGATTTGTACCGGA 1788
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TGAACCATGATATAGGTTACAGGTTTTCGTTTTAGGATACAATGTAGGTTGGGAGGTTGA 1848
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 GGTCTCAACAATAATCTGTTGGTAGAAATTTTCTGGGTCAATTATGGCTCAAGTCGGAGT 1908
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 TGGATAGTCCCTTTTTCTTTACCTGACTGCTTTAGATGATGTAATTAGCAATCTCTGGGT 1968
consensus_6700#1 ------------------------------------------------------------
consensus_6700#0 CTTGATAGTGAGATGGATCGTTTGCACAAAAAAAAAA 2005
consensus_6700#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||