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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence
[ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG-GTA-CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAGGACGGATGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTCCTGTCCCCCCCCCCCGCCCCCCGTCCCGCGTTTCCTCCCCTCCCACCGTCCCCCACTACCTCCCTGGCGGCCCCTCGATGCATTACTCCGCAACTCCTCCCTCGCGCACCTTCCACGACCCCCGGCCCGCCTC]
[+] EMBL CA753937 [ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGGCGTA CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAGGACGGATGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTCCTGTCCCCCCCCCCCGCCCCCCGTCCCGCGTTTCCTCCCCTCCCACCGTCCCCCACTACCTCCCTGGCGGCCCCTCGATGCATTACTCCGCAACTCCTCCCTCGCGCACCTTCCACGACCCCCGGCCCGCCTC]
[+] EMBL C74567 [ CCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG GTA CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCG CGGCGCCGGCCGCTAGCGGGAANAGCNGCGACTACGTGTGGGANGTGCT ]
[+] EMBL C26592 [ ACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG GTAGCCTNTGCCGCCTGCNGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGNACGTGCTGCGCGCCGAGGCGC ]
consensusID : consensus_6701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAGGGCCGGGCGCGCCGCGCGCGCCGACCTCGTCGCGGCGCGCGACCGCGACCCGGCCTGCGCCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCGCGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCGCCTCCGAGGTGTTCGGCGTCGAC]
[+] EMBL BF430848 [GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAGGGCCGGGCGCGCCGCGCGCGCCGACCTCGTCGCGGCGCGCGACCGCGACCCGGCCTGCGCCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCGCGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCGCCTCCGAGGTGTTCGGCGTCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6701#0 ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCA 60
consensus_6701#1 ------------------------------------------------------------
consensus_6701#0 GCCTGCGTCGACAAGTGGCCGCCGGCGG-GTACCTGTGCCGCCTGCCGGAGAAGTTCTAC 119
consensus_6701#1 GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTAC 60
**************************** *******************************
consensus_6701#0 TGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCG 179
consensus_6701#1 TGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGG-------- 112
****************************************************
consensus_6701#0 GCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCG 239
consensus_6701#1 -CGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCG 171
***********************************************************
consensus_6701#0 CAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCG 299
consensus_6701#1 CAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCG 231
************************************************************
consensus_6701#0 CGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGC 359
consensus_6701#1 CGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGC 291
*** *********************************** ********************
consensus_6701#0 GCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAG 419
consensus_6701#1 GCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAG 351
****************************************** *** *************
consensus_6701#0 GACGGA---TGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTC- 475
consensus_6701#1 GGCCGGGCGCGCCGCGCGCGCCGACCTC-GTCGCGGCGCGCGACCGCGACCCGGCCTGCG 410
* * * * * ** * **** *** * * * * *** *** *
consensus_6701#0 CTGTCCCCCCCCCCCGCCCCCCGTCCCGC----GTTTCCTCCCCTCCCA---CCGTCCCC 528
consensus_6701#1 CCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCG 470
* ** * ** ** * * * * ***** * ** ** * *
consensus_6701#0 CACTACCTCCCTGGCGGCCCCTCGAT-GCATTACTCCGCAACTCCTCCCTCG----CGCA 583
consensus_6701#1 CGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCG 530
* * * ** ** * * *** * *** ******* * ***
consensus_6701#0 CCTTCCACGACCCCCGGCCCGCCTC 608
consensus_6701#1 CCTCCGAGGTGTTCGGCGTCGAC-- 553
*** * * * * * ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||