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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1714 fasta sequence
[TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCGATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTCGGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGATACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCGTCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCGACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCGGGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCCGGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGCTACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTCTCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGG-TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT-GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA-TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT-GGCTGGTTGGATATCAATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA]
[+] EMBL AK071687 [TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCGATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTCGGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGATACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCGTCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCGACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCGGGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCCGGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGCTACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTCTCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGG TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT GGCTG ]
[+] EMBL AK071481 [ CCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGACCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGAAGGGG TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT GGCTGGTTGGATATCAATATGGATC ]
[+] EMBL BI799576 [ TCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGGCTACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTTCGCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCACTGGTAATGTGCTTTGGTTAATATTAGTCCCAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTCGGCTGGTTGGATATC ATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA]
consensusID : consensus_6702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[AGGAGGGGNAGACNNGAGGAACCCGCGGNGNGCAAAATTTCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATGNTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATCGATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATATCGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNTCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGTTCTAGATATCGATCTGGGGTGAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCAATATGGATCATAATTAAGTAAAAAAAAAAAA]
[-] EMBL AA753452 [AGGAGGGGNAGACNNGAGGAACCCGCGGNGNGCAAAATTTCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATGNTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATCGATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATATCGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNTCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGTTCTAGATATCGATCTGGGGTGAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCAATATGGATCATAATTAAGTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6702#0 TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCG 60
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 ATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTC 120
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGA 180
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCG 240
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCG 300
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 ACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCG 360
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCC 420
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGC 480
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTC 540
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCG 600
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAG 660
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 ATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGC 720
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 ATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTAC 780
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTC 840
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCG 900
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCG 960
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 CAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCC 1020
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTC 1080
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGAC 1140
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 GAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCG 1200
consensus_6702#1 ------------------------------------------------------------
consensus_6702#0 TGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGGTACCTGCGCGAGCGCAAG 1260
consensus_6702#1 --------------------AGGAGGGGNAGACNNGAGGA---ACCCGCG-GNGNGCAAA 36
*** * ** *** * * *** *** * * ****
consensus_6702#0 ATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATG 1320
consensus_6702#1 ATT-TCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATG 95
** *** ********************** ************** **** *********
consensus_6702#0 CTCGACACCGACGAGGCGTTCGCCATCTT-CGTCGACCGCCTCGCCGCCATGAACTGATC 1379
consensus_6702#1 NTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATC 155
******************** ******* ******** * *******************
consensus_6702#0 GGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGT 1439
consensus_6702#1 GATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATAT 215
* ****** ************ **************** ******************* *
consensus_6702#0 CGA----CGATGAGATGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTAT 1495
consensus_6702#1 CGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNT 275
*** ******** ****************************************** *
consensus_6702#0 CGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGC 1555
consensus_6702#1 CGTCGTCGTCTTTGGTTGCTTCATCAAGTTCG-TTCTAGATATCGATCTGGGGTG----- 329
******************************** **********************
consensus_6702#0 ATGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTT 1615
consensus_6702#1 -----AATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTT 384
*******************************************************
consensus_6702#0 AAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCA 1675
consensus_6702#1 AAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCA 444
******* ****************************************************
consensus_6702#0 ATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA 1714
consensus_6702#1 ATATGGATCATAATTAAGTAAAAA--------AAAAAAA 475
******************** * * ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||