cluster # 6705

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Oryza sativa
cluster # 6705 cluster # 6705 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6705#0 length = 645 sequences # 1

consensus_6705#1 length = 564 sequences # 3

consensusID : consensus_6705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGAGGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCTGGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCCATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAGATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTCTCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGGAATAATTTTTGACTGAATCGACTATATTAAAACCTCCCCGGAGTTGCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACA]

[+] EMBL AK062659             [CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGAGGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCTGGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCCATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAGATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTCTCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGGAATAATTTTTGACTGAATCGACTATATTAAAACCTCCCCGGAGTTGCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACA]




>consensus_6705#0
CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGA
GGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCT
GGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCC
ATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAG
ATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTC
TCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAG
CTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCC
GCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACT
GTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGG
AATAATTTTTGACTGAATCGACTATATTAAAACCTCCCCGGAGTTGCTGGGCTGAGAGCG
TTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACA

consensusID : consensus_6705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 564
fasta sequence

                              [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA]

[-] EMBL CA763547             [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA]
[-] EMBL CA763548             [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA]
[-] EMBL CA763546             [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA]




>consensus_6705#1
GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGA
GGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACA
GATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAAC
TCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATAC
TGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCG
CCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACT
AGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAG
AGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAAC
TTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATG
GGACTATTATCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6705#0      CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGA 60
consensus_6705#1      ------------------------------------------------------------
                                                                                  

consensus_6705#0      GGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCT 120
consensus_6705#1      ------------------------------------------------------------
                                                                                  

consensus_6705#0      GGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCC 180
consensus_6705#1      ------------------------------------------------------------
                                                                                  

consensus_6705#0      ATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAG 240
consensus_6705#1      ------------------------------------------------------GAGACA 6
                                                                               *  

consensus_6705#0      ATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTC 300
consensus_6705#1      AGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTG 66
                      * ** ********************************** * ***************** 

consensus_6705#0      TCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAG 360
consensus_6705#1      TCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAG 126
                      ************** *********************************************

consensus_6705#0      CTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCC 420
consensus_6705#1      CTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCC 186
                      **************************** ************ ******************

consensus_6705#0      GCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACT 480
consensus_6705#1      ACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACT 246
                       *************************************** *******************

consensus_6705#0      G--------TGGTTTTG----TACAATAATGGCTCAATACTAGGTT-------GTGCTTA 521
consensus_6705#1      GATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTA 306
                      *        ********    **  *  **** * *  * * * *        *    **

consensus_6705#0      TGCTTTGACGTTAAGCTGGAA-----TAATTTTTGACTGAATCGACT--ATATTAAAACC 574
consensus_6705#1      GCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTT 366
                        * *  *   * * * *        *  ****  **   *  * **  *** **     

consensus_6705#0      TCCCCGGAGTT----GCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTA- 629
consensus_6705#1      TGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGG 426
                      * *      **    * * *****  *   **** *****      *   ** * * *  

consensus_6705#0      --TCCATTTTTATTCACA------------------------------------------ 645
consensus_6705#1      ATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAG 486
                        * ** ***** *                                              

consensus_6705#0      ------------------------------------------------------------
consensus_6705#1      GTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTA 546
                                                                                  

consensus_6705#0      ------------------
consensus_6705#1      TTATCAAAAAAAAAAAAA 564