These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1680 fasta sequence [GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATCTCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTGCGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACCAACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGCAACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT] [+] EMBL AK105712 [GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATCTCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTGCGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACCAACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTG ] [+] EMBL CB676321 [ AGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGAACACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAA ] [-] EMBL CB676322 [ ATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGCAACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT] consensusID : consensus_6715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [CGAGGTHGTTRGATTCCTGCTGCAGCCGGACGTCTGHAGCGCTGGCGCSGCGCCGGCSGGTGCGCTTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGWTTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTWG] [+] EMBL AA754293 [CGAGGTHGTTRGATTCCTGCTGCAGCCGGACGTCTGHAGCGCTGGCGCSGCGCCGGCSGGTGCGCTTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGWTTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTWG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6715#0 GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATC 60 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTG 120 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 CGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACC 180 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 AACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCAC 240 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 ATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCG 300 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAG 360 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 CTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTC 420 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGAC 480 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 AAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCG 540 consensus_6715#1 --------------------------------CGAGGTHGTTRGATTCCTGCTGCAGCCG 28 **** *** ***************** consensus_6715#0 GACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCG 600 consensus_6715#1 GACGTCTGHAGCGCTGGCGCSG-CGCCGGCSGGTGCGC-TTGCACATAGTTGGCGTCGCG 86 ******** ********** * ******* *** ******************** consensus_6715#0 AGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGA 660 consensus_6715#1 AGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGW 146 ******************** ******************************* **** consensus_6715#0 TTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCT 720 consensus_6715#1 TTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCT 206 ** ************** ** *************************************** consensus_6715#0 CTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTA 780 consensus_6715#1 CTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTA 266 *********************************************** ************ consensus_6715#0 GCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATG 840 consensus_6715#1 GCCGAGGACGAGGAGCCCGTWG-------------------------------------- 288 ******************** * consensus_6715#0 TGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGC 900 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 ATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTC 960 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATC 1020 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 GCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGC 1080 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 CTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAG 1140 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAAC 1200 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 CACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTC 1260 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCC 1320 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 GGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCT 1380 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTT 1440 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 GATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCA 1500 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATT 1560 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 GCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGC 1620 consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 AACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT 1680 consensus_6715#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||