Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6716 cluster # 6716       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6716#0 length = 2705 sequences # 3  
consensus_6716#1 length = 870 sequences # 1  

consensusID : consensus_6716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2705
fasta sequence
                              [TCCATGGCCCCCGCCGCCGCCGAGCAGGAGCTGCTCCTCCACCTGAAGCTCGCCTTCCTCGCCCGGGAGCCCCCCGCCTGCGTCCTCTCCCTCGCCAGAAAAGCTGGGGGAGGTTCTGTCACGCCACACGTTCAAAATTTTATTTTGGAGAGTTGTACTGGCAATAATGCAGGGGGAGATCAAAACTGTAGTTATGTTACAACTATTCTTAAAAGGATTATAGCAGAAGCTGAGTTATCGTCAGATATTGTGATTGATGGACTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCAATGACAATAAACGAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAGGTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCATACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTTTTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATATGTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGATCCAAAGTGAGCCAACCTGATCATCCCCCAGCAAATACTGGTTATATCTTGCTTAGGCATGCGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTAAAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTGTAACGAAAAAAGTCCAGCGCGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATTCTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTTCGTCCGTTTCTTTTTTTTTTCCCCTTTTTCGGTTTTATTTTCTTTTTGCCATTTTTTCACCATTTTTCGCGGTTTTTTCGTCCATTTTCCTTTTATTTTCTTTGCGTTGTTTTTCTCTTCTTTTTTTTTCTTTCACCATTTTTCCGGTTTCAACGAAATCCAACGCGCTATTTTTGGCGGTTTTTTTTTTTCGGCCTGAATCCTAGCGCCGCCGCCATGGCGATTTGCCTCTCCATGCGTTTCCTCATCCAATTGATTGCAAAAACCGATTCCCCACTACTCTCTCATCATTTTCCCCTTAATTTCCCATTAGTTCGTCATTTTTTATTCCGAGTTTTGCGGATTGCTTCGATTTTGATAAAAATTCGAAAAATGAGATCGAGTGGATCAAAATTTCTCAACAATTTTGGAGATCGAGAAAGATTCGGCCGCATTTGACGGAGAGGATCGACTCCGTCATCGTACGGGCACGGTACTATGCGAGCTCGACCAAATTACCGGATTTGGTGGGAGGATCGGCTCCGTCATGGTACGGGCACGAAACTGTTCGACATGGGCCTACAGCTCCACTTGTGGGCTGAGCCAAAGAGAGGTAGGCCAGGCAAAGGACTGTTCAAGCTAGGTCTACAGCTCCACTTGTGGGCTGAGCCGAAGAGAGATAGGTCGAGCAGATAGAGGCAACGGACTGCTCTAGGACTAGAGCTGAAAAGGAAGGAAAGAATGAACGTTCGGTCCAAAAAACAAGAAAGCATTTGGTTCAAAATCAAGGGAGTATAATGTATAGTATAAAAAACGTTTTTACCCGTTGCAACGCACGGGCATTTTTTCTAGTGATTATACAATGTGTAAAATTGAGCTTGAACTCTGTCGCTAGCTCTCTGCAAAGCCCTTCTACTATATGTGTCGCTTTACCTTGATGTTTTTCTTGAGCAAATAGATATGCAGTTACTGTTGCTATGACTTTAGTATGATCATCTGTCTCATCAGCATCATACTTTTTCCTTGCCTGTTATATCAACAGAAAATCTCATGACCGAAACTTTTAAAAGTTATATGTGAGTGTGTCTTACCCTTCTAAATGTTTCCATGATAAACAGCTAGGTTCTGGTGTTGGTTTGGTTGGTGTATGTCTGAACTATGTCAGCGCCTCCAAGGTTATTCTTACTGATGGTGATGCATCTACACTAGAAAACATGAAAGGCAACATGGAAATGAATAACTTATGCGTTGAGCAGGAAGGTTCTCAACTTCCGGAAGAGAACAAGAATAAGGTACAATGCAAATATCTTTCATGGGAAGAAACATCTGAAAGCGATCTATGGGACTGCAGGCCAGAC-TTAGTCCTTGGTGCAGATATAATATATGATCCGGTCTGTGTGCCGCACCTTA-TTAGAGTGCTTTCTATGCTA-TTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGCAAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTACATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACA-AAGCAGCTGCGGATGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGAGTCTTCTTCCT-TATAT-GCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGACACTGATTGGAACTCCAGCAAAAAAAAAATTTTATAGTAGTTGACTGATCATAAATTCGTTTTTGAAGTAATCAGTTGACTATGATCATAAATTCGAAATGGTATCAATGACAATTATCAACGTC]

[+] EMBL AK100211             [TCCATGGCCCCCGCCGCCGCCGAGCAGGAGCTGCTCCTCCACCTGAAGCTCGCCTTCCTCGCCCGGGAGCCCCCCGCCTGCGTCCTCTCCCTCGCCAGAAAAGCTGGGGGAGGTTCTGTCACGCCACACGTTCAAAATTTTATTTTGGAGAGTTGTACTGGCAATAATGCAGGGGGAGATCAAAACTGTAGTTATGTTACAACTATTCTTAAAAGGATTATAGCAGAAGCTGAGTTATCGTCAGATATTGTGATTGATGGACTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCAATGACAATAAACGAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAGGTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCATACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTTTTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATATGTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGATCCAAAGTGAGCCAACCTGATCATCCCCCAGCAAATACTGGTTATATCTTGCTTAGGCATGCGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTAAAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTGTAACGAAAAAAGTCCAGCGCGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATTCTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTTCGTCCGTTTCTTTTTTTTTTCCCCTTTTTCGGTTTTATTTTCTTTTTGCCATTTTTTCACCATTTTTCGCGGTTTTTTCGTCCATTTTCCTTTTATTTTCTTTGCGTTGTTTTTCTCTTCTTTTTTTTTCTTTCACCATTTTTCCGGTTTCAACGAAATCCAACGCGCTATTTTTGGCGGTTTTTTTTTTTCGGCCTGAATCCTAGCGCCGCCGCCATGGCGATTTGCCTCTCCATGCGTTTCCTCATCCAATTGATTGCAAAAACCGATTCCCCACTACTCTCTCATCATTTTCCCCTTAATTTCCCATTAGTTCGTCATTTTTTATTCCGAGTTTTGCGGATTGCTTCGATTTTGATAAAAATTCGAAAAATGAGATCGAGTGGATCAAAATTTCTCAACAATTTTGGAGATCGAGAAAGATTCGGCCGCATTTGACGGAGAGGATCGACTCCGTCATCGTACGGGCACGGTACTATGCGAGCTCGACCAAATTACCGGATTTGGTGGGAGGATCGGCTCCGTCATGGTACGGGCACGAAACTGTTCGACATGGGCCTACAGCTCCACTTGTGGGCTGAGCCAAAGAGAGGTAGGCCAGGCAAAGGACTGTTCAAGCTAGGTCTACAGCTCCACTTGTGGGCTGAGCCGAAGAGAGATAGGTCGAGCAGATAGAGGCAACGGACTGCTCTAGGACTAGAGCTGAAAAGGAAGGAAAGAATGAACGTTCGGTCCAAAAAACAAGAAAGCATTTGGTTCAAAATCAAGGGAGTATAATGTATAGTATAAAAAACGTTTTTACCCGTTGCAACGCACGGGCATTTTTTCTAGTGATTATACAATGTGTAAAATTGAGCTTGAACTCTGTCGCTAGCTCTCTGCAAAGCCCTTCTACTATATGTGTCGCTTTACCTTGATGTTTTTCTTGAGCAAATAGATATGCAGTTACTGTTGCTATGACTTTAGTATGATCATCTGTCTCATCAGCATCATACTTTTTCCTTGCCTGTTATATCAACAGAAAATCTCATGACCGAAACTTTTAAAAGTTATATGTGAGTGTGTCTTACCCTTCTAAATGTTTCCATGATAAACAGCTAGGTTCTGGTGTTGGTTTGGTTGGTGTATGTCTGAACTATGTCAGCGCCTCCAAGGTTATTCTTACTGATGGTGATGCATCTACACTAGAAAACATGAAAGGCAACATGGAAATGAATAACTTATGCGTTGAGCAGGAAGGTTCTCAACTTCCGGAAGAGAACAAGAATAAGGTACAATGCAAATATCTTTCATGGGAAGAAACATCTGAAAGCGATCTATGGGACTGCAGGCCAGAC TTAGTCCTTGGTGCAGATATAATATATGATCCGGTCTGTGTGCCGCACCTTA TTAGAGTGCTTTCTATGCTA TTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGCAAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTACATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACA AAGCAGCTGCGGATGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGAGTCTTCTTCCT TATAT GCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGACACTGATTGGAACTCCAGCAGATCATTTTTTTTATAGTAGTTGACTGATCATAAATTCGTTTTTGAAGTAATCAGTTGACTATGATCATAAATTCGAAATGGTATCAATGACAATTATCAACGTC]
[+] EMBL BI813768             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAA AAACATCTGAAA CGATCTATGGGACTTCAGGCCAGACTTTAGTCCTTGGTCCAGATATAATATATGATCCGGTCTGTGTGCCGCACCTTATTTAGAGTGCTTTCTATGCTA TTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGCAAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTACATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACA AAGCAGCTGCGGATGCCAAGTTGTCTGTTGTCAACATTACC ACAGTGAAGCTCCTTTGAGTCTTCTTCCT TATAT GCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGACACTGATTGGAACTCCAGCAAAAAAAAAA                                                                                                ]
[+] EMBL BQ907523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAGATATAATATATGATCCGGTCTGTGT CCGCACCTTA TTAGAGTGCNTTCTATGCTACTTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGCAAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTACATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACANAAGCAGCTGCGGATGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGAGTCTTCTTCCTGTATATGGCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGACACTGATTGGAACTCCAGCAAAAAAAAAA                                                                                                ]


>consensus_6716#0 TCCATGGCCCCCGCCGCCGCCGAGCAGGAGCTGCTCCTCCACCTGAAGCTCGCCTTCCTC GCCCGGGAGCCCCCCGCCTGCGTCCTCTCCCTCGCCAGAAAAGCTGGGGGAGGTTCTGTC ACGCCACACGTTCAAAATTTTATTTTGGAGAGTTGTACTGGCAATAATGCAGGGGGAGAT CAAAACTGTAGTTATGTTACAACTATTCTTAAAAGGATTATAGCAGAAGCTGAGTTATCG TCAGATATTGTGATTGATGGACTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCA ATGACAATAAACGAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAG GTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCAT ACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTT TTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATAT GTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGAT CCAAAGTGAGCCAACCTGATCATCCCCCAGCAAATACTGGTTATATCTTGCTTAGGCATG CGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTA AAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTG TAACGAAAAAAGTCCAGCGCGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATT CTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTTCGTCCGT TTCTTTTTTTTTTCCCCTTTTTCGGTTTTATTTTCTTTTTGCCATTTTTTCACCATTTTT CGCGGTTTTTTCGTCCATTTTCCTTTTATTTTCTTTGCGTTGTTTTTCTCTTCTTTTTTT TTCTTTCACCATTTTTCCGGTTTCAACGAAATCCAACGCGCTATTTTTGGCGGTTTTTTT TTTTCGGCCTGAATCCTAGCGCCGCCGCCATGGCGATTTGCCTCTCCATGCGTTTCCTCA TCCAATTGATTGCAAAAACCGATTCCCCACTACTCTCTCATCATTTTCCCCTTAATTTCC CATTAGTTCGTCATTTTTTATTCCGAGTTTTGCGGATTGCTTCGATTTTGATAAAAATTC GAAAAATGAGATCGAGTGGATCAAAATTTCTCAACAATTTTGGAGATCGAGAAAGATTCG GCCGCATTTGACGGAGAGGATCGACTCCGTCATCGTACGGGCACGGTACTATGCGAGCTC GACCAAATTACCGGATTTGGTGGGAGGATCGGCTCCGTCATGGTACGGGCACGAAACTGT TCGACATGGGCCTACAGCTCCACTTGTGGGCTGAGCCAAAGAGAGGTAGGCCAGGCAAAG GACTGTTCAAGCTAGGTCTACAGCTCCACTTGTGGGCTGAGCCGAAGAGAGATAGGTCGA GCAGATAGAGGCAACGGACTGCTCTAGGACTAGAGCTGAAAAGGAAGGAAAGAATGAACG TTCGGTCCAAAAAACAAGAAAGCATTTGGTTCAAAATCAAGGGAGTATAATGTATAGTAT AAAAAACGTTTTTACCCGTTGCAACGCACGGGCATTTTTTCTAGTGATTATACAATGTGT AAAATTGAGCTTGAACTCTGTCGCTAGCTCTCTGCAAAGCCCTTCTACTATATGTGTCGC TTTACCTTGATGTTTTTCTTGAGCAAATAGATATGCAGTTACTGTTGCTATGACTTTAGT ATGATCATCTGTCTCATCAGCATCATACTTTTTCCTTGCCTGTTATATCAACAGAAAATC TCATGACCGAAACTTTTAAAAGTTATATGTGAGTGTGTCTTACCCTTCTAAATGTTTCCA TGATAAACAGCTAGGTTCTGGTGTTGGTTTGGTTGGTGTATGTCTGAACTATGTCAGCGC CTCCAAGGTTATTCTTACTGATGGTGATGCATCTACACTAGAAAACATGAAAGGCAACAT GGAAATGAATAACTTATGCGTTGAGCAGGAAGGTTCTCAACTTCCGGAAGAGAACAAGAA TAAGGTACAATGCAAATATCTTTCATGGGAAGAAACATCTGAAAGCGATCTATGGGACTG CAGGCCAGACTTAGTCCTTGGTGCAGATATAATATATGATCCGGTCTGTGTGCCGCACCT TATTAGAGTGCTTTCTATGCTATTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGC AAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTA CATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACAAAGCAGCTGCGGA TGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGAGTCTTCTTCCTTA TATGCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGA CACTGATTGGAACTCCAGCAAAAAAAAAATTTTATAGTAGTTGACTGATCATAAATTCGT TTTTGAAGTAATCAGTTGACTATGATCATAAATTCGAAATGGTATCAATGACAATTATCA ACGTC



consensusID : consensus_6716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 870
fasta sequence
                              [AGATATTGTGATTGATGGGCTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCAGTACATCTTTTAAACATCGTTATATAGCCAAGTAGTAGTTAATAACTGTTGAAATGCTGTACTAAAAGTAACTTATTTTATAACATGTGCAGAATAATTCATCCTTAAATAGGACTGAGAAGATCTATAAAGAAATATCTTTTATTTCTCCTACAAGTGAGTTTTTAATTTTGAATTCTTCCAAATTATAATAGTTTGTAACATGCACCTTTTATGTAGATGACAATAAACAAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAGGTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCATACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTTTTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATATGTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGATCCAAAGTGAGCCAACCTGATCATCCCCCAACAAATACTGGTTATATCTTGCTTAGGCATGCGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTAAAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTGTAACGAAAAAAGTCCGGCACGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATTCTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTT]

[+] EMBL CB632609             [AGATATTGTGATTGATGGGCTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCAGTACATCTTTTAAACATCGTTATATAGCCAAGTAGTAGTTAATAACTGTTGAAATGCTGTACTAAAAGTAACTTATTTTATAACATGTGCAGAATAATTCATCCTTAAATAGGACTGAGAAGATCTATAAAGAAATATCTTTTATTTCTCCTACAAGTGAGTTTTTAATTTTGAATTCTTCCAAATTATAATAGTTTGTAACATGCACCTTTTATGTAGATGACAATAAACAAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAGGTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCATACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTTTTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATATGTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGATCCAAAGTGAGCCAACCTGATCATCCCCCAACAAATACTGGTTATATCTTGCTTAGGCATGCGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTAAAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTGTAACGAAAAAAGTCCGGCACGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATTCTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTT]


>consensus_6716#1 AGATATTGTGATTGATGGGCTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCAGT ACATCTTTTAAACATCGTTATATAGCCAAGTAGTAGTTAATAACTGTTGAAATGCTGTAC TAAAAGTAACTTATTTTATAACATGTGCAGAATAATTCATCCTTAAATAGGACTGAGAAG ATCTATAAAGAAATATCTTTTATTTCTCCTACAAGTGAGTTTTTAATTTTGAATTCTTCC AAATTATAATAGTTTGTAACATGCACCTTTTATGTAGATGACAATAAACAAGTAAGCTTG GTTGCTCGATTATCATGTTCTATCAATATGCTCGAAGGTGATACAGGGTGCTCTCTTTGG CCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCATACCCAAAAATTTTCTCTAGGAAG TGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTTTTAGTTTAGATACATGGAAAATG TTATCTTTATCTAGCATATATATATTTATAGGAATATGTTCAGCTCAACTACTCTATCTT CTGCTGTAAAATATTATTACTGTAACCAGGGACAGATCCAAAGTGAGCCAACCTGATCAT CCCCCAACAAATACTGGTTATATCTTGCTTAGGCATGCGTTTTGCAACACAAATATATAG AAGTCCATTGTACATTTCTCTAATCTACTACTACTTAAAAAGTATAAGATGTTTCCTTCG TCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTGTAACGAAAAAAGTCCGGCACGGA AAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATTCTTATCTGTACTAAAAAAGCGGA CAAAAAAGAAGCTCGGCACGGCAAAATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6716#0      TCCATGGCCCCCGCCGCCGCCGAGCAGGAGCTGCTCCTCCACCTGAAGCTCGCCTTCCTC 60
consensus_6716#1      -----AGATATTGTGATTGATGGGCTTTATGAGGAATTTGGCC---AGTTCATGTCGTCA 52
                            *     *     *  * **   *   *    *   **   ** **   *     

consensus_6716#0      GCCCGGGAGCCCCCCGCCTGCGTCCTCTCCCTCGCCAGAAAAGCTGGGGGAGGTTCTGTC 120
consensus_6716#1      AAATCAGTACATCTTTTAAACATCGT-TATATAGCCAAGTAGTAGTTAATAACTGTTGAA 111
                            *  *  *       * ** * *   * ****   *         *  *  **  

consensus_6716#0      ACGCCACACGTTCAAAATTTTATTTTGGAGAGTTGTACTGGCAATAATGCAGGGGGAGAT 180
consensus_6716#1      ATGCTGTACTAAAAGTAACTTATTTTATAACAT-GTGCAG--AATAATTCATCCTTAAAT 168
                      * **   **    *  *  *******  *   * ** * *  ****** **     * **

consensus_6716#0      CAAAACTGTAGTTATGTTACAACTATTCTTAAAAGGATTATAGCAGAAGCTGAGTTATCG 240
consensus_6716#1      -AGGACTGAGAAGAT-CTATAAAGAAATATCTTTTATTTCTCCTACAAG-TGAGTT---- 221
                       *  ****     **  ** **  *    *       ** *   * *** ******    

consensus_6716#0      TCAGATATTGTGATTGATGGACTTTATGAGGAATTTGGCCAGTTCATGTCGTCAAAATCA 300
consensus_6716#1      TTTAATTTTG-AATTCTTCCAAATTAT-AATAGTTTG--TAACATGCACCTTTTATGTAG 277
                      *   ** ***  ***  *  *  **** *  * ****   *        * *  *  *  

consensus_6716#0      ATGACAATAAACGAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAG 360
consensus_6716#1      ATGACAATAAACAAGTAAGCTTGGTTGCTCGATTATCATGTTCTATCAATATGCTCGAAG 337
                      ************ ***********************************************

consensus_6716#0      GTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCAT 420
consensus_6716#1      GTGATACAGGGTGCTCTCTTTGGCCATCAGGTTTATTCCTATCTGAGTTTATTCTTTCAT 397
                      ************************************************************

consensus_6716#0      ACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTT 480
consensus_6716#1      ACCCAAAAATTTTCTCTAGGAAGTGTTGCTTTGAGGTAAATACCGATTATTTTTTGTGTT 457
                      ************************************************************

consensus_6716#0      TTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATAT 540
consensus_6716#1      TTAGTTTAGATACATGGAAAATGTTATCTTTATCTAGCATATATATATTTATAGGAATAT 517
                      ************************************************************

consensus_6716#0      GTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGAT 600
consensus_6716#1      GTTCAGCTCAACTACTCTATCTTCTGCTGTAAAATATTATTACTGTAACCAGGGACAGAT 577
                      ************************************************************

consensus_6716#0      CCAAAGTGAGCCAACCTGATCATCCCCCAGCAAATACTGGTTATATCTTGCTTAGGCATG 660
consensus_6716#1      CCAAAGTGAGCCAACCTGATCATCCCCCAACAAATACTGGTTATATCTTGCTTAGGCATG 637
                      ***************************** ******************************

consensus_6716#0      CGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTA 720
consensus_6716#1      CGTTTTGCAACACAAATATATAGAAGTCCATTGTACATTTCTCTAATCTACTACTACTTA 697
                      ************************************************************

consensus_6716#0      AAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTG 780
consensus_6716#1      AAAAGTATAAGATGTTTCCTTCGTCCGTTAATAAATAAAAGCGATAAAAAAGTTCGATTG 757
                      ************************************************************

consensus_6716#0      TAACGAAAAAAGTCCAGCGCGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATT 840
consensus_6716#1      TAACGAAAAAAGTCCGGCACGGAAAAAAAAAGGCGTGGCAAAAAAAAAACCTGACCGATT 817
                      *************** ** *****************************************

consensus_6716#0      CTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTTCGTCCGT 900
consensus_6716#1      CTTATCTGTACTAAAAAAGCGGACAAAAAAGAAGCTCGGCACGGCAAAATTTT------- 870
                      *****************************************************       

consensus_6716#0      TTCTTTTTTTTTTCCCCTTTTTCGGTTTTATTTTCTTTTTGCCATTTTTTCACCATTTTT 960
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CGCGGTTTTTTCGTCCATTTTCCTTTTATTTTCTTTGCGTTGTTTTTCTCTTCTTTTTTT 1020
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TTCTTTCACCATTTTTCCGGTTTCAACGAAATCCAACGCGCTATTTTTGGCGGTTTTTTT 1080
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TTTTCGGCCTGAATCCTAGCGCCGCCGCCATGGCGATTTGCCTCTCCATGCGTTTCCTCA 1140
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TCCAATTGATTGCAAAAACCGATTCCCCACTACTCTCTCATCATTTTCCCCTTAATTTCC 1200
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CATTAGTTCGTCATTTTTTATTCCGAGTTTTGCGGATTGCTTCGATTTTGATAAAAATTC 1260
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GAAAAATGAGATCGAGTGGATCAAAATTTCTCAACAATTTTGGAGATCGAGAAAGATTCG 1320
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GCCGCATTTGACGGAGAGGATCGACTCCGTCATCGTACGGGCACGGTACTATGCGAGCTC 1380
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GACCAAATTACCGGATTTGGTGGGAGGATCGGCTCCGTCATGGTACGGGCACGAAACTGT 1440
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TCGACATGGGCCTACAGCTCCACTTGTGGGCTGAGCCAAAGAGAGGTAGGCCAGGCAAAG 1500
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GACTGTTCAAGCTAGGTCTACAGCTCCACTTGTGGGCTGAGCCGAAGAGAGATAGGTCGA 1560
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GCAGATAGAGGCAACGGACTGCTCTAGGACTAGAGCTGAAAAGGAAGGAAAGAATGAACG 1620
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TTCGGTCCAAAAAACAAGAAAGCATTTGGTTCAAAATCAAGGGAGTATAATGTATAGTAT 1680
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      AAAAAACGTTTTTACCCGTTGCAACGCACGGGCATTTTTTCTAGTGATTATACAATGTGT 1740
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      AAAATTGAGCTTGAACTCTGTCGCTAGCTCTCTGCAAAGCCCTTCTACTATATGTGTCGC 1800
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TTTACCTTGATGTTTTTCTTGAGCAAATAGATATGCAGTTACTGTTGCTATGACTTTAGT 1860
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      ATGATCATCTGTCTCATCAGCATCATACTTTTTCCTTGCCTGTTATATCAACAGAAAATC 1920
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TCATGACCGAAACTTTTAAAAGTTATATGTGAGTGTGTCTTACCCTTCTAAATGTTTCCA 1980
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TGATAAACAGCTAGGTTCTGGTGTTGGTTTGGTTGGTGTATGTCTGAACTATGTCAGCGC 2040
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CTCCAAGGTTATTCTTACTGATGGTGATGCATCTACACTAGAAAACATGAAAGGCAACAT 2100
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GGAAATGAATAACTTATGCGTTGAGCAGGAAGGTTCTCAACTTCCGGAAGAGAACAAGAA 2160
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TAAGGTACAATGCAAATATCTTTCATGGGAAGAAACATCTGAAAGCGATCTATGGGACTG 2220
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CAGGCCAGACTTAGTCCTTGGTGCAGATATAATATATGATCCGGTCTGTGTGCCGCACCT 2280
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TATTAGAGTGCTTTCTATGCTATTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGC 2340
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      AAACAAAGAAGAAACCAGCAACGAATTCAGTAGCGCTGCGACAGAAGTTCCTGTCGCCTA 2400
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACAAAGCAGCTGCGGA 2460
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGAGTCTTCTTCCTTA 2520
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TATGCTCTCATATGATAGATCAAGTGTACAGCTACTTAAAATTACATTATTATCCTAAGA 2580
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CACTGATTGGAACTCCAGCAAAAAAAAAATTTTATAGTAGTTGACTGATCATAAATTCGT 2640
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      TTTTGAAGTAATCAGTTGACTATGATCATAAATTCGAAATGGTATCAATGACAATTATCA 2700
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      ACGTC 2705
consensus_6716#1      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)