cluster # 6719

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Oryza sativa
cluster # 6719 cluster # 6719 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6719#0 length = 992 sequences # 3

consensus_6719#1 length = 679 sequences # 1

consensusID : consensus_6719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 992
fasta sequence

                              [GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCA-GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTGCCTCGGCCTCGTTCCCAACGTCAACATGATCATAACCGACTACTGGATGCCCGGCATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCGGTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGTATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTGTGTGCTCTGCAAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA]

[+] EMBL AK059734             [GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTGAGTTGATCAATGGCGGCAGCGGCGCA GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGCTCGAGCTCCTCTGCCTCGGCCTCGTCCCCAACGTCAACATGATCATCACCGACTACTGGATGCCCGGCATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCGGTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGTATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTGTGTGCTCTGCAAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA]
[+] EMBL AU068709             [      CCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAANGGCGGCAGCGGCGCA GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTNCTGGCGGTGGACGACAACTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTNCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTNCCTCGGCCTNGTTCCCAAAGTCAACATGATCATAACCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU068710             [            CTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCANGGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTCCTGGCGGTGGACGACANCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTGCCTCGGCCTCGTTCCCAACGTCAACATGATCATNACCGACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_6719#0
GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGG
ATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCAGGCTCCGGCG
GCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGG
GACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAG
ATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTC
CGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTC
TGCCTCGGCCTCGTTCCCAACGTCAACATGATCATAACCGACTACTGGATGCCCGGCATG
ACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCGGTG
GTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCC
GAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGTATC
AGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTT
TTTGGTGGCTTTCTCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAA
GAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAAT
TGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTGTGTGCTCTGCAAAGACGCCATGAAA
AAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCAC
AATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAG
AGTTTTGACATTAATTTAAGTCTTGCCAATTA

consensusID : consensus_6719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CGCAGATCCCTCTCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCTTTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGCATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCGGTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGTATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAAAAAAAAAAAA]

[-] EMBL CA763159             [CGCAGATCCCTCTCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCTTTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGCATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCGGTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGTATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAAAAAAAAAAAA]




>consensus_6719#1
CGCAGATCCCTCTCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGC
GCTCAAGCTCCTTTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTAC
TGGATGCCCGGCATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCC
AAGGAGATCCCGGTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGC
CTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGG
CTTTGCAGCCGTATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTA
ACTCCTAGGATTTTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTTCTG
CTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGC
CTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTC
TGCGAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCA
GGAGGTTTCTCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAAC
TGTTTCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6719#0      GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGG 60
consensus_6719#1      ------------------------------------------------------------
                                                                                  

consensus_6719#0      ATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCAGGCTCCGGCG 120
consensus_6719#1      ------------------------------------------------------------
                                                                                  

consensus_6719#0      GCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGG 180
consensus_6719#1      ------------------------------------------------------------
                                                                                  

consensus_6719#0      GACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAG 240
consensus_6719#1      ------------------------------------------------------------
                                                                                  

consensus_6719#0      ATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTC 300
consensus_6719#1      -----------------------------------------------CGC-AGATCCCTC 12
                                                                     *** *    ****

consensus_6719#0      CGGAGCTCCAAGTACAGGGTGACCAC-GGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCT 359
consensus_6719#1      TCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCT 72
                        ****** **  ** ******** * ****** ***   ** ****** ** **** **

consensus_6719#0      CTGCCTCGGCCTCGTTCCCAACG-TCAACATGATCATA-ACCGACTACTGGATGCCCGGC 417
consensus_6719#1      TTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGC 132
                       *  *********** ******* *********** *  ** ******************

consensus_6719#0      ATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCG 477
consensus_6719#1      ATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCG 192
                      ********   **********************************  *************

consensus_6719#0      GTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGC 537
consensus_6719#1      GTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGC 252
                      ********** ****************** ******************************

consensus_6719#0      GCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGT 597
consensus_6719#1      GCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGT 312
                      **********************************  ************** *********

consensus_6719#0      ATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATT 657
consensus_6719#1      ATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATT 372
                      ** *********************************************************

consensus_6719#0      TTTTTTGGTGGCTTTCT----CAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCT 713
consensus_6719#1      TTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTT---CTGCTGCTGCCT 429
                      *****************    ************************   ************

consensus_6719#0      CAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAG 773
consensus_6719#1      CAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAG 489
                      ************************************************************

consensus_6719#0      TTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCT--GTGTGCTCTGCAAAGAC 831
consensus_6719#1      TTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGAC 549
                      *****************************************  *********** *****

consensus_6719#0      GCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTC 891
consensus_6719#1      GCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTC 609
                      *********************************** ************************

consensus_6719#0      TCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAG 951
consensus_6719#1      TCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAA 669
                      ******* **************** ********************************** 

consensus_6719#0      ATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA 992
consensus_6719#1      AAAAAAAAAA------------------------------- 679
                      *      * *