These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 551 fasta sequence [TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGTGAA-TGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGAC-CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCAC-TGCCACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGCACGCCACCAGTC] [+] EMBL CF310095 [TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGAC CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCAC TGCCACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGCACGCCACCAGTC] [-] EMBL BI807368 [ tttttttTTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTACACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGGGAA TGTCCTCTTTAGCTTGTCAAGGATACCAGCAG CTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGACACTCCCTAAGTTTTGTG GGGCGTACATAaca ] [-] EMBL BI801229 [ AAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGTGAA TGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGA GA CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCACGTG CACCG ATTCTCTTT ] consensusID : consensus_6724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAAAATCTGAAAANTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCTTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCATCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTCGTACGGGA] [-] EMBL AA754456 [TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAAAATCTGAAAANTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCTTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCATCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTCGTACGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6724#0 TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCA 60 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 GACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAG 120 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 AAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAA 180 consensus_6724#1 -------------TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAA--AATCTGAAAA 45 *** * * * * * * ******** consensus_6724#0 CTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAA 240 consensus_6724#1 NTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAA 105 *********************************************************** consensus_6724#0 ATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAA 300 consensus_6724#1 ATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAA 165 ******* ********************* ******* ********************** consensus_6724#0 CAGGAGTAGTGCGTTTGGTGAAT-GTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTC 359 consensus_6724#1 CAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTC 225 **************** ****** ************************************ consensus_6724#0 CTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCA 419 consensus_6724#1 TTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCA 285 ** * *** * ******************************************** *** consensus_6724#0 TCCTCGACGACCTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCACTGCC 479 consensus_6724#1 TCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTC--GT 343 **** ******************************* **************** * consensus_6724#0 ACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGC 539 consensus_6724#1 ACGGGA------------------------------------------------------ 349 ** * * consensus_6724#0 ACGCCACCAGTC 551 consensus_6724#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||