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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1369 fasta sequence
[GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA-GACAATGGGGAA-CAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC--AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA]
[+] EMBL AK061486 [GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA]
[+] EMBL AK098926 [ CTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC AAGTAAAGTTATTAATCAAGT ]
[+] EMBL BM419100 [ GGGA GCCCGGGCTGACCGCGCTCACCGC GCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCGGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCNCCGGACGACAATGGAGAACCAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCCNCAGTAAAGTGATTAATCAAGTTTCAaaaa ]
consensusID : consensus_6727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA]
[+] EMBL BI813616 [GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6727#0 GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATC 60
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 TTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCC 120
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 GTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGC 180
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 AGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGC 240
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 CCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCG 300
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 CTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCC 360
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 CCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAAC 420
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 GTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAAC 480
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 ACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAG 540
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 AAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCC 600
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 CGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACC 660
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 ACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGAC 720
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 TTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTG 780
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 CTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGG 840
consensus_6727#1 ------------------------------------------------------------
consensus_6727#0 AGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACG 900
consensus_6727#1 ---------------------------------------------GCCCTGTTTCTCACC 15
** ***** ****
consensus_6727#0 CCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTG 960
consensus_6727#1 CCGCT-CTGGCTTCGATCCC-TCGTGGCC-GTTGGCCCCC--CTGGTGCTCGTCGGCGTG 70
***** ***** ******** ****** * ******** * ******************
consensus_6727#0 ATGATGATGCGCGCGGTGGC-GGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGC 1019
consensus_6727#1 ATGATGATGCGC-CGGTGGCCGGAGGTGGACTGG-CCGACATGAGGCAG-CCGT-CCGGC 126
************ ******* ************* ************** **** *****
consensus_6727#0 GTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGG 1079
consensus_6727#1 GTTCCTCACC-TGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCG-CGG 184
********** ********************************************* ***
consensus_6727#0 CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCT 1139
consensus_6727#1 CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCG--GTGCT 242
************************************************* ** *****
consensus_6727#0 CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCC-GGAGACA 1198
consensus_6727#1 CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACA 302
**************************************************** *******
consensus_6727#0 -ATGGGGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATT 1256
consensus_6727#1 CATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATT 362
**** *********************************** ******************
consensus_6727#0 TCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGT 1313
consensus_6727#1 TCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGT 422
********* ************************************** *********
consensus_6727#0 TCAAAAGGCTTAGTAGGATGTTCAAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA 1369
consensus_6727#1 TCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA-------- 470
**** **** ********************** ***** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||