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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2267 fasta sequence
[CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCGCCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAGACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGTCGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTCACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTCGAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTATCTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGGAAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTCTGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGGAGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGTTGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGGTGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCTGGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTGGGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCGCTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCAGAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAACTACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGCTTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATGTAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGTTCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGGTGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCTCTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTCTTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAGTAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTCTATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTTCTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCATCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCCACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAGCTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTGTGAGGATCAGACCAGCAAAAGGAAGTACCTTATAGCCAATTATCGCAGTTAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTATTTAGATGGACAAGTATGCTCCAGAAACACTCCTTCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGGTAATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGTTCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCGGCGTTTGTTTTTTAATCATGTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAATAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAGCTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAATCTGAACT]
[+] EMBL AK107589 [CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCGCCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAGACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGTCGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTCACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTCGAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTATCTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGGAAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTCTGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGGAGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGTTGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGGTGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCTGGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTGGGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCGCTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCAGAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAACTACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGCTTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATGTAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGTTCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGGTGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCTCTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTCTTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAGTAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTCTATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTTCTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCATCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCCACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAGCTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTGTGAGGATCAGACCAGCAAAAGGAAGTACCTTATAGCCAATTATCGCAGTTAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTATTTAGATGGACAAGTATGCTCCAGAAACACTCCTTCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGGTAATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGTTCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCGGCGTTTGTTTTTTAATCATGTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAATAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAGCTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAATCTGAACT]
consensusID : consensus_6732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 424 fasta sequence
[CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTACCAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTATGCAGACATATTTGTGTGCATACTTTCCCAGACAT-TTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAATAATGCACTAGGCAATCTCACTTTTGCAGCTAGTATTATATCTCTGTATTTCTGGAGCATACTTGTCCATATTCCATAAACAGTTGGATTGTCTTGACCTGTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA]
[+] EMBL BM418762 [CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTACCAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTATGCAGACATATTTGTGTGCATACTTTCCCAGACAT TTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAA ]
[+] EMBL BM419957 [CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTA CAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTA CCAGACATATTGGTGTGCATACTTTCCCAGACAT TTTCTAATGTGCGT CTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAA ]
[+] EMBL BI813469 [ TGCAGACATATTTGTGTGCATACTTTCCCAGACATGTTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAATAGAAATCTAATGCACTAGGCAATCTCACTTTTGCAGCTAGTATTATATCTCTGTATTTCTGGAGCATACTTGTCCATATTCCATAAACAGTTGGATTGTCTTGACCTGTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6732#0 CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCG 60
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAG 120
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGT 180
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTC 240
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTC 300
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 GAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTAT 360
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGG 420
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 AAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTC 480
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGG 540
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 AGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGT 600
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGG 660
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCT 720
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 GGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTG 780
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 GGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCG 840
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCA 900
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 GAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAAC 960
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGC 1020
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATG 1080
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGT 1140
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGG 1200
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCT 1260
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTC 1320
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAG 1380
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTC 1440
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTT 1500
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCA 1560
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCC 1620
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAG 1680
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTG 1740
consensus_6732#1 ----------------------CCGGT-GTTGAGAAGGTAAAAGATGTTGTGGAATGACG 37
* * *************************** *
consensus_6732#0 TGAGG-ATCAGACCAGCAAAAG------GAAGTACCTTATAGCCAATTATCGCAG----T 1789
consensus_6732#1 AAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTT 97
*** **** ********** *** * * * ** * * *** *
consensus_6732#0 TAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTA--TTTAGATGGACAAGTATGCT 1847
consensus_6732#1 GGTACCAGGTGTTCTCCACAGG--AGTCTCCACCCTTGATCTTCTATAAACTAATTTA-T 154
** **** **** * * **** * * ** ** ** ** * * * *
consensus_6732#0 CCAGAAACACTCCT-TCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTG 1906
consensus_6732#1 GCAGACATATTTGTGTGCATACTTTCCCAGACATTTTCTAATGTGCGTGCTTTCTTGTCA 214
**** * * * * * *** * * * ** * * *** * * *
consensus_6732#0 TTGAGAAGGTAAAAGAT----GTTGTGGAATGACGAAAGGGAT-CAAGCCAGCAAAAGGT 1961
consensus_6732#1 TAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAA 274
* ** * *** ** ** * * * *** **** * * ****
consensus_6732#0 AATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGT 2021
consensus_6732#1 AATAATGCAC--TAGGCAATCTCACT--TTTGCAGCTAGTATTAT----ATCTCTGTATT 326
*** ** * * * *** * *** *** * ** * ** ** *** *
consensus_6732#0 TCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCG 2081
consensus_6732#1 TCTGGAGCAT-ACTTGTCCATATTCCATAAAC--AGTTGGATTGT-------CTTGACCT 376
** * * *** * * ** * *** * * * * ** *** ** * **
consensus_6732#0 GCGTTTGTTTTTTAATCAT-GTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAA 2140
consensus_6732#1 GTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA------------ 424
* * **** * *** * * * ** ** * * * * *
consensus_6732#0 TAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAG 2200
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAAT 2260
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 CTGAACT 2267
consensus_6732#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||