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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1602 fasta sequence
[AGACCTTCTCCCTCTCCACCTCGCTCCTCTCTCCTCTCGTGGCCATGGCGATGGCAGCAAGGGCGCGCTGCTCGAGGCAACCCAACTCCCATCGCCTCCTCGCCGTGGTTGTCCTCGCCGCTATTCTGCTCCTTCCGGTGGCCTCCGCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGAGGGGGACGGGGTGGAGAACCGGTCGGCGGCGAGGCAGTGGGCGACGGGGAAGGACGAGGGGGAGCTGGTCTCCGGGGAGGAGTCGAGGGGAGGTGGGTCGGTGG-TGGAGGACGAGTTCGCGGGTGGGTTCGGCTCCCTCGACAGCATGCTGCAGTGGGCGATCGGAAATTCTGATCCGGATAAGTTGAAAGAACAGGCAGAGGGTGTGCAGAAATTGTCTGCAGATGAGCTGCTCAAGCGGCGAATGGAGATCAAGGAGTTGATGGAGAAATTAAAGATGCCGTCAGATGCTGACTTAATGAAGATTGCAATTGCTGACTTAAATAATTCTTCCATTTCACTGGAGGATCGGCAGCGTGCACTGCAGGAACTATTAATTCTCGTTGAGCCCATTGACAATGCTAATGATCTTGACAAACTAGGAGGCCTCGTTGCTGTGATTCAAGATCTTAATAATGCAAATGAAGAAATAAGGACCACTTCTGCATGGGTCCTGGGTAAAGCCAGTCAGAATAATGCCCTTGTCCAAAATCAGATCCTAGGTTATGGAGCTTTGGCAAGATTAGTGAAGATGGGCTATGCAACTTCTGCAGAAGAAGCTACAAAGGCGCTGTATGCTATATCCGCTTTGGTTAGAGACAATATAAATGGTCAGGAGGCATTTCATTCAGAAAATGGAAGTGCAATGTTGCAGCACATATTGGCGAGTAATAGTGTTGACGTTCGGCTTCAGAAGAAGGCAGTGTTTCTAGTGACAGATCTAGCAGATTTTCAGCTAAATTCTGGAAATTCAGGACTTCCTTTCTTAAGTGACCGTATTTTTCTTAAGTCATTGGTTGATATGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTACTGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCTGTGACCTCAGCAGTGTACTGTACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGGAGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCACAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAGGCATTAAATTTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATCCTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGACATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTTTCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATGAAGCAAATTTTCCCCTTAAGTCNAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059516 [AGACCTTCTCCCTCTCCACCTCGCTCCTCTCTCCTCTCGTGGCCATGGCGATGGCAGCAAGGGCGCGCTGCTCGAGGCAACCCAACTCCCATCGCCTCCTCGCCGTGGTTGTCCTCGCCGCTATTCTGCTCCTTCCGGTGGCCTCCGCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGAGGGGGACGGGGTGGAGAACCGGTCGGCGGCGAGGCAGTGGGCGACGGGGAAGGACGAGGGGGAGCTGGTCTCCGGGGAGGAGTCGAGGGGAGGTGGGTCGGTGG TGGAGGACGAGTTCGCGGGTGGGTTCGGCTCCCTCGACAGCATGCTGCAGTGGGCGATCGGAAATTCTGATCCGGATAAGTTGAAAGAACAGGCAGAGGGTGTGCAGAAATTGTCTGCAGATGAGCTGCTCAAGCGGCGAATGGAGATCAAGGAGTTGATGGAGAAATTAAAGATGCCGTCAGATGCTGACTTAATGAAGATTGCAATTGCTGACTTAAATAATTCTTCCATTTCACTGGAGGATCGGCAGCGTGCACTGCAGGAACTATTAATTCTCGTTGAGCCCATTGACAATGCTAATGATCTTGACAAACTAGGAGGCCTCGTTGCTGTGATTCAAGATCTTAATAATGCAAATGAAGAAATAAGGACCACTTCTGCATGGGTCCTGGGTAAAGCCAGTCAGAATAATGCCCTTGTCCAAAATCAGATCCTAGGTTATGGAGCTTTGGCAAGATTAGTGAAGATGGGCTATGCAACTTCTGCAGAAGAAGCTACAAAGGCGCTGTATGCTATATCCGCTTTGGTTAGAGACAATATAAATGGTCAGGAGGCATTTCATTCAGAAAATGGAAGTGCAATGTTGCAGCACATATTGGCGAGTAATAGTGTTGACGTTCGGCTTCAGAAGAAGGCAGTGTTTCTAGTGACAGATCTAGCAGATTTTCAGCTAAATTCTGGAAATTCAGGACTTCCTTTCTTAAGTGACCGTATTTTTCTTAAGTCATTGGTTGATATGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTACTGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCTGTGACCTCAGCAGTGTACTGTACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGGAGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCACAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAGGCATTAAATTTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATCCTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGACATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTTTCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATGAAGCAAA ]
[+] EMBL OSS13963A [ TCCCTCTCCACCTCGCTCCTCTCTCCTCTCGTGGCCATGGCGATGGCAGCAAGGGCGCGCTGCTCGAGGCAACCCAACTCCCATCGCCTCCTCGCCGTGGTTGTCCTCGCCGCTATTCTGCTCCTTCCGGTGGCCTCCGCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGAGGGGGACGGGGTGGAGAACCGGTCGGCGGCGAGGCAGTTGGCGACGGGGAAGGACGAGGGGGAGCTGGTCTCCGGGGAGGAGTCGAGGGGAGGTNGGTCGGTGGTTGAAGGACGANTTCGCGGGTTGGTTCGGCTTCCTCGACAACATGCT ]
[+] EMBL AU174033 [ CTCAAAGAGGGCACAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAGGCATTAAATTTTTCAGGAGTATAGTTGATGTTTGGGGCCATTNTTGCAGTGATCAGAATCCTCANAGGATCAAATGGAGTCATGGAATATTTATNTGTGGATNTTCGGCCAGGTGGTGACATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTNTTTTCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCNCTATATTTTAACCNCTGCAATGAAGCAAATTTTCCCCTTAAGTCNAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[ACGAGACAAGGGGTATGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTACTGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCAGTGACCTCAGCAGTGTACTGTACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGGAGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCACAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAGGCATTAAATCTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATCCTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGACATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTTTCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATGAAGCAAATTTTCCCCTTAAGTCACCTGTGTGGCTGTGTCTTCCTCTTGAGAATGTATCCACGTGTACTGGAAGTTGATGTCAAAAAAAAAA]
[-] EMBL CA762508 [ACGAGACAAGGGGTATGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTACTGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCAGTGACCTCAGCAGTGTACTGTACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGGAGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCACAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAGGCATTAAATCTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATCCTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGACATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTTTCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATGAAGCAAATTTTCCCCTTAAGTCACCTGTGTGGCTGTGTCTTCCTCTTGAGAATGTATCCACGTGTACTGGAAGTTGATGTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6733#0 AGACCTTCTCCCTCTCCACCTCGCTCCTCTCTCCTCTCGTGGCCATGGCGATGGCAGCAA 60
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GGGCGCGCTGCTCGAGGCAACCCAACTCCCATCGCCTCCTCGCCGTGGTTGTCCTCGCCG 120
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CTATTCTGCTCCTTCCGGTGGCCTCCGCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGAGG 180
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GGGACGGGGTGGAGAACCGGTCGGCGGCGAGGCAGTGGGCGACGGGGAAGGACGAGGGGG 240
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 AGCTGGTCTCCGGGGAGGAGTCGAGGGGAGGTGGGTCGGTGGTGGAGGACGAGTTCGCGG 300
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GTGGGTTCGGCTCCCTCGACAGCATGCTGCAGTGGGCGATCGGAAATTCTGATCCGGATA 360
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 AGTTGAAAGAACAGGCAGAGGGTGTGCAGAAATTGTCTGCAGATGAGCTGCTCAAGCGGC 420
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GAATGGAGATCAAGGAGTTGATGGAGAAATTAAAGATGCCGTCAGATGCTGACTTAATGA 480
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 AGATTGCAATTGCTGACTTAAATAATTCTTCCATTTCACTGGAGGATCGGCAGCGTGCAC 540
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TGCAGGAACTATTAATTCTCGTTGAGCCCATTGACAATGCTAATGATCTTGACAAACTAG 600
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GAGGCCTCGTTGCTGTGATTCAAGATCTTAATAATGCAAATGAAGAAATAAGGACCACTT 660
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CTGCATGGGTCCTGGGTAAAGCCAGTCAGAATAATGCCCTTGTCCAAAATCAGATCCTAG 720
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 GTTATGGAGCTTTGGCAAGATTAGTGAAGATGGGCTATGCAACTTCTGCAGAAGAAGCTA 780
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CAAAGGCGCTGTATGCTATATCCGCTTTGGTTAGAGACAATATAAATGGTCAGGAGGCAT 840
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTCATTCAGAAAATGGAAGTGCAATGTTGCAGCACATATTGGCGAGTAATAGTGTTGACG 900
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTCGGCTTCAGAAGAAGGCAGTGTTTCTAGTGACAGATCTAGCAGATTTTCAGCTAAATT 960
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CTGGAAATTCAGGACTTCCTTTCTTAAGTGACCGTATTTTTCTTAAGTCATTGGTTGATA 1020
consensus_6733#1 ------------------------------------------ACGAGACAAGG---GGTA 15
** ** * * **
consensus_6733#0 TGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTAC 1080
consensus_6733#1 TGCTGTCAAGATTTGACCTCGACCTTCAAGAAAAGGTTTTGTTGGCTATCAAGAGCCTAC 75
************************************************************
consensus_6733#0 TGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCTGTGACCTCAGCAGTGTACTGT 1140
consensus_6733#1 TGAAGCTTTCATCCACTGAAGCCACAGATTTCGAGTCCAGTGACCTCAGCAGTGTACTGT 135
************************************** *********************
consensus_6733#0 ACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGG 1200
consensus_6733#1 ACAGATTGGGCGTGCAGTTGGAGGAGTTGCCATCAGAAGAGCAAAAAGAGTATGCTGGGG 195
************************************************************
consensus_6733#0 AGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCA 1260
consensus_6733#1 AGGTGGATGACCTCCGGAGAGAAGTCCAAATTCTGTTCCAAGACAAGCTCAAAGAGGGCA 255
************************************************************
consensus_6733#0 CAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAG 1320
consensus_6733#1 CAAAGACTGCATTGTGATGATATTAGGACGAATTAACGACGGATGTAGTATGCAATGGAG 315
************************************************************
consensus_6733#0 GCATTAAATTTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATC 1380
consensus_6733#1 GCATTAAATCTTTCAGGAGTATAGTTGATGTTTGGGGCCATTCTTGCAGTGATCAGAATC 375
********* **************************************************
consensus_6733#0 CTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGAC 1440
consensus_6733#1 CTCAGAGGATCAAATGGAGTCATGGAATATTTATCTGTGGATCTTCGGCCAGGTGGTGAC 435
************************************************************
consensus_6733#0 ATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTT 1500
consensus_6733#1 ATAGTGTCTGTAGGATTTGATGTAATCGTAGGTTAGGATTATTAACTGTATGGCTTCTTT 495
************************************************************
consensus_6733#0 TCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATG 1560
consensus_6733#1 TCCTGAAGCTACCTATGGTTAATTCATCATTCCCTGCACTATATTTTAACCACTGCAATG 555
************************************************************
consensus_6733#0 AAGCAAATTTTCCCCTTAAGTCNAAAAAAAAAAAAAAAAAAA------------------ 1602
consensus_6733#1 AAGCAAATTTTCCCCTTAAGTCACCTGTGTGGCTGTGTCTTCCTCTTGAGAATGTATCCA 615
**********************
consensus_6733#0 -------------------------------
consensus_6733#1 CGTGTACTGGAAGTTGATGTCAAAAAAAAAA 646
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||