cluster # 6734

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Oryza sativa
cluster # 6734 cluster # 6734 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6734#0 length = 541 sequences # 2

consensus_6734#1 length = 227 sequences # 2

consensusID : consensus_6734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence

                              [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA]

[+] EMBL CA999855             [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA]
[+] EMBL CA999854             [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCT                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_6734#0
CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCG
CCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACC
GGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGT
TCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCA
GAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG
TAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCA
GCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTC
TTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCT
TGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAA
A

consensusID : consensus_6734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 227
fasta sequence

                              [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]

[-] EMBL CF315131             [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]
[+] EMBL CF315132             [ TGGACTGAAGGAGTAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCGTATTAGTTTGAATAAGAACTGTTAGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]




>consensus_6734#1
ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTT
TTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATAT
TTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6734#0      CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCG 60
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACC 120
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGT 180
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCA 240
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG 300
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCA 360
consensus_6734#1      ----------------------------------------------------------AT 2
                                                                                  

consensus_6734#0      GCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTC 420
consensus_6734#1      GGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTT 62
                      *  *  ****** **** * ** ********* ******** * ******** ****** 

consensus_6734#0      TTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCT 480
consensus_6734#1      TTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTT 122
                      ***************** **************************************** *

consensus_6734#0      TGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAA 540
consensus_6734#1      TGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAA 182
                      **************  **************************** **        *****

consensus_6734#0      A-------------------------------------------- 541
consensus_6734#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG 227
                      *