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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1448 fasta sequence
[GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAGCAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT-TGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGC]
[+] EMBL AK058736 [GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAGCAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT TGCTTCTGGTGATGAAAATTGTATGAACTAGCATC ]
[+] EMBL AK071655 [ TCTCTTGCTGGCTGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGCAGCTCGGGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTCGTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCTCGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTTGATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGCTTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGCGGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATTTCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCTTCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAGAAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTT TGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGC]
[-] EMBL CB653297 [ CAGCTGCAGCAGTAGCATCTTTGTGTTCCCAGTAATTGCCCAATCCAACTCCAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAAGAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCGAGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGGTGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCTGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGTCCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTGTGCTTCTG ]
consensusID : consensus_6737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[AGAGGACGAGACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAAA]
[-] EMBL CA763657 [AGAGGACGAGACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCTCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTGGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTAGCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6737#0 GCAAGGCCGAGCTGAGCTGAGCTGAGCTGCAGCGAGTGACAGCTCCACAGAAAAGCAAAG 60
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 CAAGCAAGCTACCTCTCTCTCTCTCTCTCTCTCTCTCGGTAGCTTCTCTCTCTTGCTGGC 120
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TGGCTCTCTGCGCGTGGTGTGTACTCCTGCTGTCCCTGCTGCGGCTACAGCTACTGTTGC 180
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 AGCTCGAGCACCCAGAAGGCCAGAAACCCAGAACAAGTCTCACACCCTCCTCCTCCTCTC 240
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 GTCCATACTAGCACCACCGCTGCTGCTGTTGCTCCTGCTGCTGTGCTGCCGCCGCCTGCT 300
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 CGTCCAAGAATCTTCCAGCTTTCCCCAATACTGAGCAGCCAACTCCTGCTACCGCTTCTT 360
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 GATCTGTGGGATTTTCTTCTTGTTTCGAATCCAAGATCACTTCCAATCCATAGTTTTGGC 420
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TTTTGGCTTCCCTCCAGCATCAGTGAAAATTGGTTCTTTGGAGGGGAAGAAATGGATAGC 480
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 GGCTGGATATGCTTCTTGAGCCAGATTGCTGATTTGATGCAATAAGATTTCTATCTTATT 540
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TCTTGCTGCAGTATCACAAATCAAACTAGGAGAACTGACTGAGAAGTGAAATATTCTGCT 600
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TCCAAGAATCAATCAGATAAACTGATTCCAAGAAAATAACAAGAAGTAATCAGATAACAG 660
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 AAGCAGCTGCAGCTGCAGCAGTAGCATCTTTCTGTTCCCAGTAATTGCCCAATCCAACTC 720
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 CAGCTAGATTTAATCAGATAGAGAAGTAATCTGCTGGATTGAAATCCATGGGTAGGGGAA 780
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 GAGGCAGAGGGAGGAAGCTCACCAATGGCAGGAGCCATGAGGACAAGGGCAGCAGCGGCG 840
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 AGGAGGTTGTGCCTGCGAGGAAGAGGAGGGGAAGGCCGCAGAAGCGCATTGTCGACAAGG 900
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TGGTGGATCAAGCAGAGGCCAAGAATCTAACCGAGGGCGACGACGGTGATGCTGACTACC 960
consensus_6737#1 -------------------------------------------------AGAGGACGA-- 9
* *** *
consensus_6737#0 AACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCT 1020
consensus_6737#1 GACAAGGGGAAGGAGAAGANGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGCT 69
****** *********** ****************************************
consensus_6737#0 CTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTG 1080
consensus_6737#1 CTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTG 129
************************************************************
consensus_6737#0 ACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATG 1140
consensus_6737#1 ACCTTGAGGAGAACAGCTCAAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATG 189
************************************************************
consensus_6737#0 GCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGCGGCGAGCCGCGGAGGCGGGGA 1200
consensus_6737#1 GCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACCCCGCGGCGAGCCGCGGAGGCGGGGA 249
********************************** *************************
consensus_6737#0 TATAGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTG 1260
consensus_6737#1 T--AGCTTGGAAACTTTGGAATAGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTTG 307
* *********************************************************
consensus_6737#0 GGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGT 1320
consensus_6737#1 GGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGT 367
************************************************************
consensus_6737#0 TTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAA 1380
consensus_6737#1 TTTCCTTCAAAATTTTGTCATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAA 427
************************************************************
consensus_6737#0 CATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTA 1440
consensus_6737#1 CATATACTAATCCGCGAGACATCGGAGTTTTGCTTCTGGTGATGAAAATTGTATGAACTA 487
************************************************************
consensus_6737#0 GCATCGGC---------------------------------------------------- 1448
consensus_6737#1 GCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTGCAAAAAAAAAAAAA 547
********
consensus_6737#0 -
consensus_6737#1 A 548
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||