cluster # 6738

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Oryza sativa
cluster # 6738 cluster # 6738 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6738#0 length = 570 sequences # 3

consensus_6738#1 length = 236 sequences # 1

consensusID : consensus_6738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 570
fasta sequence

                              [ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG-ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAAAANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA]

[+] EMBL CA757763             [ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCATGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTGAATCAGCGGGTGGTTGGTGATGATGGTTANTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAAAANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA]
[+] EMBL AK062922             [                                                                                      AGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTC                                                                                                   ]
[+] EMBL AU091683             [                                                                                                                                            TGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCAaaaaaaa                                                                                 ]




>consensus_6738#0
ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTG
GCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCC
TCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTT
TAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAA
ATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAG
TCCGCATTTCTTCTGGTGATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTT
GGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATT
TGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCT
CATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAAAANNAC
NNNNNNAAAAAAANNAAAGCAAAAAACAAA

consensusID : consensus_6738#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCCTTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT]

[+] EMBL CA757772             [ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCCTTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT]




>consensus_6738#1
ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCG
CTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTT
CCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCC
TTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6738#0      ------ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCG 54
consensus_6738#1      ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCG 60
                            ******************************************************

consensus_6738#0      CTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTT 114
consensus_6738#1      CTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTT 120
                      ************************************************************

consensus_6738#0      CCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTC 174
consensus_6738#1      CCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCC 180
                      ***************************** ****** ** * ****** ** ****** *

consensus_6738#0      TTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTT 234
consensus_6738#1      TTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT---- 236
                      **********  **   * ** ***** ****  * ******* * ***** ****    

consensus_6738#0      ATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGT 294
consensus_6738#1      ------------------------------------------------------------
                                                                                  

consensus_6738#0      TGTCAGTCCGCATTTCTTCTGGTGATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGA 354
consensus_6738#1      ------------------------------------------------------------
                                                                                  

consensus_6738#0      TCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGG 414
consensus_6738#1      ------------------------------------------------------------
                                                                                  

consensus_6738#0      AAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCAT 474
consensus_6738#1      ------------------------------------------------------------
                                                                                  

consensus_6738#0      GCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAA 534
consensus_6738#1      ------------------------------------------------------------
                                                                                  

consensus_6738#0      AANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA 570
consensus_6738#1      ------------------------------------