These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCGCCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCGCCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCCCGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCTCGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCTTGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGGGCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG] [+] EMBL CA755184 [TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCGCCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCGCCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCCCGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCTCGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCTTGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGGGCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG] consensusID : consensus_674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCGCCGGCTCTCCTCCCTTGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCANAGCTTCAGTCCGCCGCCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCCGACAACTACAACTCTTCACACGNCGGCGGCGGATCTCGGCGTTCGTAGCGCAAAACTCGGNGTCGACCTGACAAGGTGGCGGCTGGACGAAGGGCGCNTTCTTCTAAGTGNTTTTGGNGGCGGTAAAANAA] [+] EMBL OS0266A [CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCGCCGGCTCTCCTCCCTTGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCANAGCTTCAGTCCGCCGCCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCCGACAACTACAACTCTTCACACGNCGGCGGCGGATCTCGGCGTTCGTAGCGCAAAACTCGGNGTCGACCTGACAAGGTGGCGGCTGGACGAAGGGCGCNTTCTTCTAAGTGNTTTTGGNGGCGGTAAAANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_674#0 TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCG 60 consensus_674#1 --------CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCG 52 *********************************** ***** ********** consensus_674#0 CCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCG 120 consensus_674#1 CCGGCTCTCCTCCCTT-GCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCG 111 **************** ******************************************* consensus_674#0 GCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGG 180 consensus_674#1 GCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGG 171 ********************************* ************************** consensus_674#0 TGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCG 240 consensus_674#1 TGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCG 231 ******* ********* * *************************************** consensus_674#0 GCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCG 300 consensus_674#1 GCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCAN-AGCTTCAGTCCGCCG 290 *********** ***************************** *************** consensus_674#0 CCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCC 360 consensus_674#1 CCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCC 350 ******* ******* ************ *********** ********** ******** consensus_674#0 CGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCT 420 consensus_674#1 -GACAACTACAACTCTT-CACACGNCGGCGGCGGATCTCGGCGTTCGTAGCG-CAAAACT 407 ********** ***** ****** *** * ************ *** *** * * ** consensus_674#0 CGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCT 480 consensus_674#1 CGGNGTCGACCTGAC-AAGGTGGCGGC-TGGACGAAGGGCGCNTTCTTC-TAAGTGNTTT 464 *** *** ******* ** **** *** * *** *** ** ** * ** * * * consensus_674#0 TGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGG 540 consensus_674#1 TGGNGGCGGTAAAANAA------------------------------------------- 481 *** * * ** ** consensus_674#0 GCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG 588 consensus_674#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||