cluster # 674

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 674 cluster # 674 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_674#0 length = 588 sequences # 1

consensus_674#1 length = 481 sequences # 1

consensusID : consensus_674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCGCCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCGCCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCCCGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCTCGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCTTGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGGGCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG]

[+] EMBL CA755184             [TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCGCCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCGCCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCCCGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCTCGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCTTGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGGGCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG]




>consensus_674#0
TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCG
CCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCG
GCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGG
TGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCG
GCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCG
CCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCC
CGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCT
CGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCT
TGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGG
GCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG

consensusID : consensus_674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCGCCGGCTCTCCTCCCTTGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCANAGCTTCAGTCCGCCGCCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCCGACAACTACAACTCTTCACACGNCGGCGGCGGATCTCGGCGTTCGTAGCGCAAAACTCGGNGTCGACCTGACAAGGTGGCGGCTGGACGAAGGGCGCNTTCTTCTAAGTGNTTTTGGNGGCGGTAAAANAA]

[+] EMBL OS0266A              [CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCGCCGGCTCTCCTCCCTTGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCANAGCTTCAGTCCGCCGCCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCCGACAACTACAACTCTTCACACGNCGGCGGCGGATCTCGGCGTTCGTAGCGCAAAACTCGGNGTCGACCTGACAAGGTGGCGGCTGGACGAAGGGCGCNTTCTTCTAAGTGNTTTTGGNGGCGGTAAAANAA]




>consensus_674#1
CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCGCCGGCTCT
CCTCCCTTGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCGGCTCGCGCA
AGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGGTGGCTGCNG
CGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCGGCGCTGGCC
GCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCANAGCTTCAGTCCGCCGCCATGCGAAG
GCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCCGACAACTACA
ACTCTTCACACGNCGGCGGCGGATCTCGGCGTTCGTAGCGCAAAACTCGGNGTCGACCTG
ACAAGGTGGCGGCTGGACGAAGGGCGCNTTCTTCTAAGTGNTTTTGGNGGCGGTAAAANA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_674#0      TCCTCATCCCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAGCCACCGGCGGCCGGCG 60
consensus_674#1      --------CCGGTCGCGAGCTCGCCGAGAAGCACTCCGCCTCAACCACCNGCGGCCGGCG 52
                             *********************************** ***** **********

consensus_674#0      CCGGCTCTCCTCCCTTCGCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCG 120
consensus_674#1      CCGGCTCTCCTCCCTT-GCCGCCGGTGCCGGCTCTGCTTCTCCGACAGCCGCGGTTGCCG 111
                     **************** *******************************************

consensus_674#0      GCTCGCGCAAGTTCTGAACCCCATCGCCCACGAGATGGTGCTCAAGATCACCGGCTTCGG 180
consensus_674#1      GCTCGCGCAAGTTCTGAACCCCATCGCCCACGANATGGTGCTCAAGATCACCGGCTTCGG 171
                     ********************************* **************************

consensus_674#0      TGGCTGCGGCGGCGGCAGCGGGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCG 240
consensus_674#1      TGGCTGCNGCGGCGGCANTGTGGGCCGGCGTACTCGCGTCGGCGACGGAGGGAGGAGGCG 231
                     ******* *********  * ***************************************

consensus_674#0      GCGCTGGCCGCCGGTGGGGTTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCG 300
consensus_674#1      GCGCTGGCCGCGTTTGGGGTTCAGTTTCTGCTCGAGGGCGGCAN-AGCTTCAGTCCGCCG 290
                     ***********   *****************************  ***************

consensus_674#0      CCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCGTGGCGGCGGCGGAGGATCTCC 360
consensus_674#1      CCATGCGAAGGCAGGNAGGGGTCGGCGTNGCCTGGGGCGTTGCGGCGGCGGCGGATCTCC 350
                     ******* ******* ************ *********** ********** ********

consensus_674#0      CGACAACTACACCTCTTGCACACGGTGGCCGTGGATCTCGGCGTGCGTGGCGGCGGAGCT 420
consensus_674#1      -GACAACTACAACTCTT-CACACGNCGGCGGCGGATCTCGGCGTTCGTAGCG-CAAAACT 407
                      ********** ***** ******  *** * ************ *** *** *  * **

consensus_674#0      CGGTGTCCACCTGACCAATGTGGAGGCGCGAGACTAGGTCGCGCTCCTCCTCAGCGCTCT 480
consensus_674#1      CGGNGTCGACCTGAC-AAGGTGGCGGC-TGGACGAAGGGCGCNTTCTTC-TAAGTGNTTT 464
                     *** *** ******* ** **** ***  *     *** ***  ** ** * ** * * *

consensus_674#0      TGGCGAGCGCTCAAGAACAGGCGCACTGTGTGACCGCGCCGCCGTCCCTCGGCGCCCTGG 540
consensus_674#1      TGGNGGCGGTAAAANAA------------------------------------------- 481
                     *** *   *   ** **                                           

consensus_674#0      GCACCTGATCTTTCGTGCGTGATCTTTCGCCCCTGATCGAAACGAGAG 588
consensus_674#1      ------------------------------------------------