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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1687 fasta sequence
[GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGATGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGTGGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCCCACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTTCGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTTGATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTTCCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACCGAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTGCGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGTCGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGCCCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCGTGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTCCGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCTGTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGACAGTCTATGTTGATGGACTTCCAGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTTGGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCAAAAAAATGA]
[+] EMBL AK074013 [GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGATGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGTGGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCCCACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTTCGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTTGATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTTCCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACCGAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTGCGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGTCGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGCCCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCGTGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTCCGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCTGTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGACAGTCTATGTTGATGGACTTCCAGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTTGGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCAAAAAAATGA]
[+] EMBL AI978459 [ GTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACCATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACNNGNANGGANGNNCNGNGGAAACCAGACAGTCTA ]
[-] EMBL AI978458 [ nnnnGTTTCAGTCANNNNNATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCA ]
consensusID : consensus_6742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[TTATTCGCCCCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTGATGGTGAGCCCGAGGCCCAGCCAGGGGGTTGAAGGATTCCAGGCCTAGGATCAGGGATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGAGTTCAGAGGGAACCCGGCCAGTCATGTGATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNTGGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCAAAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA]
[-] EMBL CA762401 [TTATTCGCCCCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTGATGGTGAGCCCGAGGCCCAGCCAGGGGGTTGAAGGATTCCAGGCCTAGGATCAGGGATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGAGTTCAGAGGGAACCCGGCCAGTCATGTGATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNTGGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCAAAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6742#0 GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGA 60
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 TGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGT 120
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 GGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCC 180
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTT 240
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTT 300
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 GATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTT 360
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACC 420
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 GAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTG 480
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGT 540
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGC 600
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCG 660
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 TGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTC 720
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCT 780
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 GTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGT 840
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 CTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGT 900
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 TGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGA 960
consensus_6742#1 ------------------------------------------------------------
consensus_6742#0 TCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACA 1020
consensus_6742#1 ---------------------------------------------------TTATTCGCC 9
* *
consensus_6742#0 TGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCC-GGTTTTTGGACATTGGTCAGCTCC 1079
consensus_6742#1 CCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTG 69
*** ** ** * * ** * * ** ** * ** * ***
consensus_6742#0 ACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGA 1139
consensus_6742#1 ATGGTGA---GCCCGAGGCCCAGCCAG-GGGGTTGAAGGATTCCAGGCCTAGGATCAGGG 125
* * * *** * ** ************* * ** * ******
consensus_6742#0 TTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGA 1199
consensus_6742#1 ATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGA-GTTCAGAGGGAACCCGG 184
**** **** * ******* *** * ** ********** ****** ** **** *
consensus_6742#0 CAGTCTATGTTGATGGACTTCC-AGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTT 1258
consensus_6742#1 CCAGTCATGT-GATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNT 243
* **** ******* *** ********** ************** ****** *
consensus_6742#0 GGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTG 1318
consensus_6742#1 GGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTG 303
************ ************* ********************************
consensus_6742#0 CTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACT 1378
consensus_6742#1 CAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACT 363
* **********************************************************
consensus_6742#0 TTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCC 1438
consensus_6742#1 TTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCC 423
******************************************** ***************
consensus_6742#0 ATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGT 1498
consensus_6742#1 ATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGT 483
************************************************************
consensus_6742#0 GCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTT 1558
consensus_6742#1 GCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTT 543
***************** ******************************************
consensus_6742#0 GAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCC 1618
consensus_6742#1 GAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCC 603
************************************************ * ********
consensus_6742#0 CATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCA 1678
consensus_6742#1 CATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCA 663
****************************** ** ** ** ******* ************
consensus_6742#0 AAAAAATGA-------------------------- 1687
consensus_6742#1 AAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA 698
*********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||