These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1687 fasta sequence [GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGATGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGTGGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCCCACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTTCGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTTGATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTTCCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACCGAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTGCGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGTCGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGCCCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCGTGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTCCGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCTGTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGACAGTCTATGTTGATGGACTTCCAGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTTGGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCAAAAAAATGA] [+] EMBL AK074013 [GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGATGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGTGGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCCCACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTTCGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTTGATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTTCCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACCGAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTGCGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGTCGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGCCCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCGTGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTCCGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCTGTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGACAGTCTATGTTGATGGACTTCCAGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTTGGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCAAAAAAATGA] [+] EMBL AI978459 [ GTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGTCTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGTTGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGATCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACATGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCCGGTTTTTGGACATTGGTCAGCTCCACCATATCACCATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGATTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACNNGNANGGANGNNCNGNGGAAACCAGACAGTCTA ] [-] EMBL AI978458 [ nnnnGTTTCAGTCANNNNNATCCATGGAAAAATTGCTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCA ] consensusID : consensus_6742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [TTATTCGCCCCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTGATGGTGAGCCCGAGGCCCAGCCAGGGGGTTGAAGGATTCCAGGCCTAGGATCAGGGATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGAGTTCAGAGGGAACCCGGCCAGTCATGTGATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNTGGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCAAAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA] [-] EMBL CA762401 [TTATTCGCCCCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTGATGGTGAGCCCGAGGCCCAGCCAGGGGGTTGAAGGATTCCAGGCCTAGGATCAGGGATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGAGTTCAGAGGGAACCCGGCCAGTCATGTGATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNTGGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTGCAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCCATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCCCATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCAAAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6742#0 GAAGCTTAACGGACCAAGCGAGAGCGAGAGCGAGAGAGATGATGGTGCTGTTGTTGCTGA 60 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 TGGCGCTGGTTTACTGCTCCTGAGGGGTAGGGAGGGAGGGGAAGGAGCACGTTCGCTTGT 120 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 GGAGCGGTTGGGTGGGTGGTGATTCTTCTTGGCGCAGCCGGCCAGGTGAAAACGGCCGCC 180 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CACCGGCTTTGCTCTGTAGTGTCCGCTGCTGATTGCTGAGGCTCCCGCTGCTCCGTTCTT 240 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CGCCGGTGGTGTTCTTGATTTCGTCGGGGGGAAAGATTCCAGGTTAACAGGCGTGGATTT 300 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 GATTGGGGGGAAATCTTGGGATATCGAGCGCAAAGATGCGGATTTGATGCATCGTTTTTT 360 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CCTCACTTCTTTTCAGCCGTCAGTCGGAGCAAGCAGATGTTTTGAATCCAGATTCCAACC 420 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 GAGGGGAACAGCCTGCTCGGAGTGTGCGTGTGACGGTGTGAGTGATAAGTAGGGCGGTTG 480 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CGCACGAGGTGTTCGTCAGAAAGCCGCAAAGGAGAAGGTGGGCGTGCAACTTGCAACCGT 540 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CGCCATCGTCACGATGAGAGACTTTGCATCTTGCTTAAGTCAAAGCGGCGTCCAGGTCGC 600 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CCATTCCTCTTCTCCAGGTGGCCAGAACATGGTGCAGTGCACCTACCTAGCCCGCCTCCG 660 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 TGGCAAATCTTGCAGCGTGACCGTCACCTGGAGCAAGATGACCATGGGGCAGGCTCTGTC 720 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CGTCGCAGTCGACGACTCCTCGAATCGTTGCCTTTGCAAGGCAGAGATAAAGCCATGGCT 780 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 GTTCTCCAAGAGGAAAGGTTCCAAGGCCATGGAGGTCGATGGTGGAGCACTGGATATCGT 840 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 CTGGGACCTGTCCTCTGCGAAGTTTGCGGCCGGGCCAGAACCCGTCGAAGGCTTCTATGT 900 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 TGCCCTGGTCTGTGATCTTGAAGCTGTTCTTGTGCTCGGCGACATGCGCAAGGATGGGGA 960 consensus_6742#1 ------------------------------------------------------------ consensus_6742#0 TCACAGGGTTTCGTCAGATGTATTGGCCTCCAATGCTGTCATGATAGCCAGGAAGGAACA 1020 consensus_6742#1 ---------------------------------------------------TTATTCGCC 9 * * consensus_6742#0 TGTTTATGGGAAGAAGGTGTATTCAGCGAAGGCCC-GGTTTTTGGACATTGGTCAGCTCC 1079 consensus_6742#1 CCCCTATAGGGGATTGGGGGCCCCGGCCCCCCCTCAGGGTTNCCGGTATCAATTAGCCTG 69 *** ** ** * * ** * * ** ** * ** * *** consensus_6742#0 ACCATATCACGATAGAGTGTGACACATCGGGGTTGAAGGATCCAAGCCTAGAAATCAGGA 1139 consensus_6742#1 ATGGTGA---GCCCGAGGCCCAGCCAG-GGGGTTGAAGGATTCCAGGCCTAGGATCAGGG 125 * * * *** * ** ************* * ** * ****** consensus_6742#0 TTGGCAAGAAGAGAGTCATGCAGGTGAAGAGACTTGCATGGAAGTTCAGGGGAAACCAGA 1199 consensus_6742#1 ATGGCCAGAAAAAGTTCATGCAAGTGGAAAGCCTTGCATGGA-GTTCAGAGGGAACCCGG 184 **** **** * ******* *** * ** ********** ****** ** **** * consensus_6742#0 CAGTCTATGTTGATGGACTTCC-AGTAGAGGTCCTATGGGATGTTCATGACTGGCTATTT 1258 consensus_6742#1 CCAGTCATGT-GATGGACCTCCCAGTAGAGGTCTATGGGGATGTTCATGACCGGCTATNT 243 * **** ******* *** ********** ************** ****** * consensus_6742#0 GGTTCATCGAATAAATGTGCCGTGTTCTTGTTTCAGTCAGGCCAATCCATGGAAAAATTG 1318 consensus_6742#1 GGTTCATCGAATGGATGTGCCGTGTTCCTGTTTCAGTCAGGCCAATCCATGGAAAAATTG 303 ************ ************* ******************************** consensus_6742#0 CTGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACT 1378 consensus_6742#1 CAGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTTTGGCTTCACT 363 * ********************************************************** consensus_6742#0 TTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGACAAGTTTCTTCGGCC 1438 consensus_6742#1 TTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGGCAAGTTTCTTCGGCC 423 ******************************************** *************** consensus_6742#0 ATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGT 1498 consensus_6742#1 ATTCTACCGTAAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGT 483 ************************************************************ consensus_6742#0 GCAAGGATTTCATGCTTCTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTT 1558 consensus_6742#1 GCAAGGATTTCATGCTTTTTAACTATTGTGTTCTAGTGATGATTAGCAAGTTGAGAATTT 543 ***************** ****************************************** consensus_6742#0 GAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGATTCTAGTGCCC 1618 consensus_6742#1 GAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCAGGATTTAGTGCCC 603 ************************************************ * ******** consensus_6742#0 CATTTGTATTATCATGTCTTTGACATATACATTCTGATCACAAATCCAAGAAGCAAAGCA 1678 consensus_6742#1 CATTTGTATTATCATGTCTTTGACATATACCTTTTGGTCCCAAATCCCAGAAGCAAAGCA 663 ****************************** ** ** ** ******* ************ consensus_6742#0 AAAAAATGA-------------------------- 1687 consensus_6742#1 AAAAAATGATGCTTTTTTGGAAAAAAAAAAAAAAA 698 ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||