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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1796 fasta sequence
[TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTTGCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCCATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCGCCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCGTTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCAGTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCTGGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGATGGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAGATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATTGCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCACTTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAACGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCAATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATTGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCTCCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTTGCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGTTGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGT--TGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTAGAGCACTGAACTT-AAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG]
[+] EMBL AK103046 [TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTTGCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCCATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCGCCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCGTTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCAGTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCTGGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGATGGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAGATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATTGCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCACTTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAACGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCAATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATTGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCTCCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTTGCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGTTGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGT TGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTAGAGCACTGAACTT AAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG]
[+] EMBL AI978504 [ AGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGTTGGGTATACATTGTTAAGATCAGAAACTCTGAGCAGGTAACAATATGGAAGGCTATGGCAAAGNCCCCTGCNTCTATTGCTCTGCNAGTCTACACGTTTATTNNNNNNTGGTTTGTTG ]
[-] EMBL AI978503 [ TGACAATGTCTAANNNNNCATGTATGCAGTTATAGTNNNAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTGGAGCACTGAACTTAAAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACACCACTCAC ]
consensusID : consensus_6743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AGGACGAGACAAGGGGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATCGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCTCCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATTGGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAAAAAAAAAAAAAAAA]
[-] EMBL CA760244 [AGGACGAGACAAGGGGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATCGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCTCCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATTGGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6743#0 TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTT 60
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCC 120
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 ATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCG 180
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 CCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCG 240
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 TTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTT 300
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATC 360
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 TTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCA 420
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCT 480
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGAT 540
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGAT 600
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGG 660
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 CCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCAC 720
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 TGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTC 780
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 TTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAG 840
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 ATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATT 900
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 GCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCAC 960
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 TTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAA 1020
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 CGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCA 1080
consensus_6743#1 ------------------------------------------------------------
consensus_6743#0 ATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTG 1140
consensus_6743#1 --------------------------------AGGACGAGAC---AAGGGGCAAGGTCTG 25
** * ** *** **********
consensus_6743#0 AGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATT 1200
consensus_6743#1 AGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATC 85
***********************************************************
consensus_6743#0 GAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGAT 1260
consensus_6743#1 GAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGAT 145
************************************************** *********
consensus_6743#0 CTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCT 1320
consensus_6743#1 CTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCT 205
************************************** ********** * *******
consensus_6743#0 CCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTG 1380
consensus_6743#1 CCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTG 265
****** ********** ******************************************
consensus_6743#0 ATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTT 1440
consensus_6743#1 ATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATT 325
************** *************************************** ** **
consensus_6743#0 GCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAAT 1500
consensus_6743#1 GGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAAT 385
* **********************************************************
consensus_6743#0 TTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGT 1560
consensus_6743#1 TTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGT 445
************************************ ****************** ****
consensus_6743#0 TGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATT 1620
consensus_6743#1 TGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATT 505
** *********************************************************
consensus_6743#0 TCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTG--AGGTATCCAGATTAGTTCAGT 1678
consensus_6743#1 TCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGT 565
************************************* *********************
consensus_6743#0 TCTAATTGTGTATGTATATAGCTAGAGCACTGAACTTAAAGGGATTGTTTTACTTGGCTT 1738
consensus_6743#1 TCTAAAAAAAAAAAAAAAA----------------------------------------- 584
***** * * *
consensus_6743#0 TGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG 1796
consensus_6743#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||