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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC]
[-] EMBL CA305879 [TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACC ]
[+] EMBL BE228471 [ ctgataGCTGGATAGAAGAAAGAGTANGAAGGAGCTTGAATACCTTACAGAACCTCC TGATGAA CAAGTGATGACGAAAGACCTGTATCAGATTGAA CTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAA GTATCACTTTTTTGTTTCCTCGA NTAACTTGGTCAAGTANAAAGCTGGCACTACTGTTACTTCCATTANGATTTGTCATGCTCTTTTGTACGCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC]
consensusID : consensus_6747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA]
[-] EMBL CA759250 [GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA]
consensusID : consensus_6747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA]
[-] EMBL CA759249 [CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6747#0 ------------------------------------------------------------
consensus_6747#2 CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATC 60
consensus_6747#1 ---GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATG 57
consensus_6747#0 ----------------------------------------------------------TT 2
consensus_6747#2 TAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATT 120
consensus_6747#1 GAGATACATGATAGCATGTAGCTATTNTTAGT-TGTGCTTTGCACTAGATTCGTTCCCGT 116
*
consensus_6747#0 TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 61
consensus_6747#2 TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 179
consensus_6747#1 CTCTGGATTACATAACTGCCTATGT-TGTTGGTTTGCAGGATGAGAATGCAAAATTGTGT 175
* *** * * * ***** ** ***********************
consensus_6747#0 CAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 121
consensus_6747#2 CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 239
consensus_6747#1 CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 235
****************** *****************************************
consensus_6747#0 GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 181
consensus_6747#2 GACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 299
consensus_6747#1 GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 295
**************** *******************************************
consensus_6747#0 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTAT 241
consensus_6747#2 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 359
consensus_6747#1 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 355
************************************** *********************
consensus_6747#0 CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 301
consensus_6747#2 TTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 419
consensus_6747#1 CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 415
***********************************************************
consensus_6747#0 TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGT 361
consensus_6747#2 TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGT 479
consensus_6747#1 TACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGT 475
***************** ************************************* ****
consensus_6747#0 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 421
consensus_6747#2 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 539
consensus_6747#1 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 535
************************************************************
consensus_6747#0 AATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 481
consensus_6747#2 AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 599
consensus_6747#1 AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 595
*** ********************************************************
consensus_6747#0 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCC 541
consensus_6747#2 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA- 658
consensus_6747#1 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAG-TATCACTTTTTTGTTAAC 654
************************************** ** * *
consensus_6747#0 TCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCA 601
consensus_6747#2 ------------------------------------------------------------
consensus_6747#1 CAAAAAAAAAAAAA---------------------------------------------- 668
consensus_6747#0 TGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCG 661
consensus_6747#2 ------------------------------------------------------------
consensus_6747#1 ------------------------------------------------------------
consensus_6747#0 TGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACC 721
consensus_6747#2 ------------------------------------------------------------
consensus_6747#1 ------------------------------------------------------------
consensus_6747#0 ACNTTGTTTCCCGGGAAC 739
consensus_6747#2 ------------------
consensus_6747#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||