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Oryza sativa
cluster # 6747 cluster # 6747       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6747#0 length = 739 sequences # 2  
consensus_6747#1 length = 668 sequences # 1  
consensus_6747#2 length = 658 sequences # 1  

consensusID : consensus_6747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 739
fasta sequence
                              [TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC]

[-] EMBL CA305879             [TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACC                                                                                                                            ]
[+] EMBL BE228471             [                                                                                                                                                                                                                                                                                                                                                                                               ctgataGCTGGATAGAAGAAAGAGTANGAAGGAGCTTGAATACCTTACAGAACCTCC TGATGAA CAAGTGATGACGAAAGACCTGTATCAGATTGAA CTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAA GTATCACTTTTTTGTTTCCTCGA NTAACTTGGTCAAGTANAAAGCTGGCACTACTGTTACTTCCATTANGATTTGTCATGCTCTTTTGTACGCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC]


>consensus_6747#0 TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTG TCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGC TGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAA AATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTA TCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTA TTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAG TAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTT GAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTG AAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTC CTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTC ATGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCC GTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTAC CACNTTGTTTCCCGGGAAC



consensusID : consensus_6747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence
                              [GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA]

[-] EMBL CA759250             [GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA]


>consensus_6747#1 GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAG ATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCT GGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGA AAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACAC AAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGA AGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCT ATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACAT ATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGT GTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATAC CTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTT TGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAA AAAAAAAA



consensusID : consensus_6747#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence
                              [CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA]

[-] EMBL CA759249             [CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA]


>consensus_6747#2 CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATC TAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATT TAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTC AGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTG ACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAA TGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATT TTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATT ACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTA GTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGA ATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAA GCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6747#0      ------------------------------------------------------------
consensus_6747#2      CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATC 60
consensus_6747#1      ---GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATG 57
                                                                                  

consensus_6747#0      ----------------------------------------------------------TT 2
consensus_6747#2      TAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATT 120
consensus_6747#1      GAGATACATGATAGCATGTAGCTATTNTTAGT-TGTGCTTTGCACTAGATTCGTTCCCGT 116
                                                                                 *

consensus_6747#0      TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 61
consensus_6747#2      TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 179
consensus_6747#1      CTCTGGATTACATAACTGCCTATGT-TGTTGGTTTGCAGGATGAGAATGCAAAATTGTGT 175
                         * *** *  *    *  *****     **     ***********************

consensus_6747#0      CAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 121
consensus_6747#2      CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 239
consensus_6747#1      CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 235
                      ****************** *****************************************

consensus_6747#0      GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 181
consensus_6747#2      GACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 299
consensus_6747#1      GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 295
                      **************** *******************************************

consensus_6747#0      ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTAT 241
consensus_6747#2      ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 359
consensus_6747#1      ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 355
                      ************************************** *********************

consensus_6747#0      CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 301
consensus_6747#2      TTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 419
consensus_6747#1      CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 415
                       ***********************************************************

consensus_6747#0      TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGT 361
consensus_6747#2      TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGT 479
consensus_6747#1      TACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGT 475
                      ***************** ************************************* ****

consensus_6747#0      AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 421
consensus_6747#2      AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 539
consensus_6747#1      AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 535
                      ************************************************************

consensus_6747#0      AATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 481
consensus_6747#2      AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 599
consensus_6747#1      AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 595
                      *** ********************************************************

consensus_6747#0      AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCC 541
consensus_6747#2      AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA- 658
consensus_6747#1      AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAG-TATCACTTTTTTGTTAAC 654
                      ************************************** **  *  *             

consensus_6747#0      TCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCA 601
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      CAAAAAAAAAAAAA---------------------------------------------- 668
                                                                                  

consensus_6747#0      TGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCG 661
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACC 721
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      ACNTTGTTTCCCGGGAAC 739
consensus_6747#2      ------------------
consensus_6747#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)