These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence [TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC] [-] EMBL CA305879 [TTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCCTCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCATGCTCTTTTGTACC ] [+] EMBL BE228471 [ ctgataGCTGGATAGAAGAAAGAGTANGAAGGAGCTTGAATACCTTACAGAACCTCC TGATGAA CAAGTGATGACGAAAGACCTGTATCAGATTGAA CTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAA GTATCACTTTTTTGTTTCCTCGA NTAACTTGGTCAAGTANAAAGCTGGCACTACTGTTACTTCCATTANGATTTGTCATGCTCTTTTGTACGCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGTGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACCACNTTGTTTCCCGGGAAC] consensusID : consensus_6747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA] [-] EMBL CA759250 [GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATGGAGATACATGATAGCATGTAGCTATTNTTAGTTGTGCTTTGCACTAGATTCGTTCCCGTCTCTGGATTACATAACTGCCTATGTTGTTGGTTTGCAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATCTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTATCACTTTTTTGTTAACCAAAAAAAAAAAAA] consensusID : consensus_6747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA] [-] EMBL CA759249 [CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATCTAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATTTAATAGATATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGTCAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCTGACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTATTTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGTAGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGAAGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6747#0 ------------------------------------------------------------ consensus_6747#2 CAGCTTCTTATGATAAAATCGATGTTGGACATGACTATTCGAAGGAAGTTCATTCTTATC 60 consensus_6747#1 ---GGTCTACATATGTCTTNTTAAGAAAACCTACNCTATGATNTGATGGCTAAACTGATG 57 consensus_6747#0 ----------------------------------------------------------TT 2 consensus_6747#2 TAAAGTACTGCAAAGATGTGGTTTTTACTGGAATGACATTTTCACTAGAAGAGGAGCATT 120 consensus_6747#1 GAGATACATGATAGCATGTAGCTATTNTTAGT-TGTGCTTTGCACTAGATTCGTTCCCGT 116 * consensus_6747#0 TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 61 consensus_6747#2 TAATAGAT-ATCTTTTGGGATATGTACAAAGGGAAAGAGGATGAGAATGCAAAATTGTGT 179 consensus_6747#1 CTCTGGATTACATAACTGCCTATGT-TGTTGGTTTGCAGGATGAGAATGCAAAATTGTGT 175 * *** * * * ***** ** *********************** consensus_6747#0 CAGGAAAAGTTGAGAACTNCAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 121 consensus_6747#2 CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 239 consensus_6747#1 CAGGAAAAGTTGAGAACTACAAATGGAGTGAATAAACGCTGCCGAGATGGAAGGTTTGCT 235 ****************** ***************************************** consensus_6747#0 GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 181 consensus_6747#2 GACACAAAGTGCTGTTTTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 299 consensus_6747#1 GACACAAAGTGCTGTTCTACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAA 295 **************** ******************************************* consensus_6747#0 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAANCGGCTGGTTTCAGATGGTTAT 241 consensus_6747#2 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 359 consensus_6747#1 ATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGAAACGGCTGGTTTCAGATGGTTAT 355 ************************************** ********************* consensus_6747#0 CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 301 consensus_6747#2 TTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 419 consensus_6747#1 CTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGATTAT 415 *********************************************************** consensus_6747#0 TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGT 361 consensus_6747#2 TACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCCCAGT 479 consensus_6747#1 TACATATTGCTACGTCCCTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCACAGT 475 ***************** ************************************* **** consensus_6747#0 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 421 consensus_6747#2 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 539 consensus_6747#1 AGTGTGTTAAAACTTGAGAGGAGACTAGGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTG 535 ************************************************************ consensus_6747#0 AATNCCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 481 consensus_6747#2 AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 599 consensus_6747#1 AATACCTTACAGAACCTCCATGATGAAGCAAGTGATGACGAAAGACCTGTATCAGATTGA 595 *** ******************************************************** consensus_6747#0 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGAAGGTATCACTTTTTTGCTTCC 541 consensus_6747#2 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAGTAAAAAAAAAAAAAAAAA- 658 consensus_6747#1 AGCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGTAG-TATCACTTTTTTGTTAAC 654 ************************************** ** * * consensus_6747#0 TCGAGGTAACTTGGTCAAGTAGAAGGCTGGCACTACTGTTACTTCCATTAGGATTTGTCA 601 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 CAAAAAAAAAAAAA---------------------------------------------- 668 consensus_6747#0 TGCTCTTTTGTACCCTAAGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCG 661 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TGGGCACTGCACANAACCACANATTGTCCTTGTTAGGATCCNAGAAAATCCTNCCTTACC 721 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 ACNTTGTTTCCCGGGAAC 739 consensus_6747#2 ------------------ consensus_6747#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||