cluster # 6749

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Oryza sativa
cluster # 6749 cluster # 6749 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6749#0 length = 528 sequences # 3

consensus_6749#1 length = 380 sequences # 1

consensusID : consensus_6749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 528
fasta sequence

                              [GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATCAAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCGCAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGCGAGGTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA]

[+] EMBL BI808723             [GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATCAAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCGCAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGCGAGGTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTCTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCC ATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCCATCACTCATGTCTGGTTCAAAAAA             ]
[+] EMBL AT003412             [                                                                                                                                                                                       GTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA]
[+] EMBL AT003411             [                                                                                                                                                                                       GTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA]




>consensus_6749#0
GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATC
AAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCG
CAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGC
GAGGTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGC
GGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTG
AGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCAT
GACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGT
AGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNA
CCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA

consensusID : consensus_6749#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [TGANCCAAAGGTTTGGTCCTCCCGGGTTTTCNAAGGAATTGTCCATCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAACCAAGCGGTACCCCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA]

[+] EMBL AT003586             [TGANCCAAAGGTTTGGTCCTCCCGGGTTTTCNAAGGAATTGTCCATCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAACCAAGCGGTACCCCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA]




>consensus_6749#1
TGANCCAAAGGTTTGGTCCTCCCGGGTTTTCNAAGGAATTGTCCATCCAAAGGCCCCATT
TGAGGGCTTCTTGGGCTCCCAACCAAGCGGTACCCCCCCAAGACCCAAAGGTCACCCATT
GTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATT
GCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGG
ATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTANAAACAGTTGTGCGATACGATACGAA
TGGTTCCAATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCAATCACTCATGTCTGGT
TCAAAAAAAGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6749#0      GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATC 60
consensus_6749#1      ------------------------------------------------------------
                                                                                  

consensus_6749#0      AAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCG 120
consensus_6749#1      ------------------------------------------------------------
                                                                                  

consensus_6749#0      CAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGC 180
consensus_6749#1      ----------------------TGANCCAAAGGTT---TGGTCCTCCCGG-GTTTTCNAA 34
                                             ** *  * ****    **    * **  ** **    

consensus_6749#0      GAGGTTGTCTCCGGTTTCGAGGATGTCATC--AAGCCCATTGAGGCTNTTGGCTCCAGCA 238
consensus_6749#1      GGAATTGTCCA----TCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAAC-CAAGCG 89
                      *   *****      * * * *    ***   * * *   *  ****     * * *** 

consensus_6749#0      GCGGTACCCCCAAGACC--AAGGTCACC-ATTGTCAACGCTGGTACCGTNTAAATCGGTC 295
consensus_6749#1      GTACC-CCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTC 148
                      *     ***********  ********* ******************** **********

consensus_6749#0      CTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGG 355
consensus_6749#1      CTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGG 208
                      ************************************************************

consensus_6749#0      TTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGG 415
consensus_6749#1      TTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGG 268
                      ************************************************************

consensus_6749#0      AGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCC 475
consensus_6749#1      AGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCC 328
                      ****** *****************************************************

consensus_6749#0      AGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA 528
consensus_6749#1      AGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA- 380
                      *** ****************************** *****************