cluster # 6753

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Oryza sativa
cluster # 6753 cluster # 6753 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6753#0 length = 701 sequences # 1

consensus_6753#1 length = 662 sequences # 1
consensus_6753#2 length = 648 sequences # 2

consensusID : consensus_6753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGTACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGCATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTGAACACCTCATCTATAAGCTCATTATTGGCTTGATGTCCCAAAACAAGTAATTAGATTATATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTGGTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACCATGTAACATTCAGTCTAGAATAGTCAGGAAAGAAAATCCAAATGGCATTTACTAATACCAGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTTCAGTATTTCACA]

[+] EMBL CB685940             [AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGTACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGCATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTGAACACCTCATCTATAAGCTCATTATTGGCTTGATGTCCCAAAACAAGTAATTAGATTATATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTGGTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACCATGTAACATTCAGTCTAGAATAGTCAGGAAAGAAAATCCAAATGGCATTTACTAATACCAGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTTCAGTATTTCACA]




>consensus_6753#0
AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAA
TCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATC
AGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAGGTAATTT
AAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGA
AAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGTACAGAGCATCCGT
TAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGCATAGTTATGTAAA
ACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTGAACACCTCATCTA
TAAGCTCATTATTGGCTTGATGTCCCAAAACAAGTAATTAGATTATATTACACAAGCATA
TACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTGGTTGTTTGCATACC
GAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACCATGTAACATTCAGT
CTAGAATAGTCAGGAAAGAAAATCCAAATGGCATTTACTAATACCAGTAGTATCTCCCAC
CAATACTTATATTGTTAAAGAAGCCCGTTCAGTATTTCACA

consensusID : consensus_6753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGCGCCGCTCCGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTATACTTCACGAAGTAAGCGAAAAGTTAGGCGATAAGATTCAAGTCGTAAAAATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTGAGGGAGCGCTGCCTGCTAATCAACTAATCCAACAGATTGAGAGTGCTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCTGACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGGTGCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAGTTCTTTCTGCCATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT]

[+] EMBL CB685939             [CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGCGCCGCTCCGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTATACTTCACGAAGTAAGCGAAAAGTTAGGCGATAAGATTCAAGTCGTAAAAATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTGAGGGAGCGCTGCCTGCTAATCAACTAATCCAACAGATTGAGAGTGCTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCTGACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGGTGCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAGTTCTTTCTGCCATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT]




>consensus_6753#1
CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGCGCCGCTCCGCTCCGCCGCGCCGGT
GGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCG
GGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAA
GCCTGTACTAGTCGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTAT
ACTTCACGAAGTAAGCGAAAAGTTAGGCGATAAGATTCAAGTCGTAAAAATTGATACAGA
GAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTT
CAAGAATGGGAAACCTTGTCATCGCTTTGAGGGAGCGCTGCCTGCTAATCAACTAATCCA
ACAGATTGAGAGTGCTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGC
AGAAAATTGTCCCTGACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGT
ATTATTGGTGCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAGTTCT
TTCTGCCATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATAT
TT

consensusID : consensus_6753#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 648
fasta sequence

                              [AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACC-CATATC-TTGTTTGCTGGGATTTGAGGTAATTTAAAAAAG-ACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCACACATGCTACTTTGCAACCTCCAAAGCACTCTCAATCTGTTGGATTAGTTGATTAGCAGGCAGCGCTCCCTCAAAGCGATGACAAGGTTTCCCATTCTTGAAGATAATAAAAGTTGGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTTACGACTTGAATCTTATCGCCTAACTTTTCGCTTACTTCCTGAAGTATAGGAACCATGTATTGACATGGACCACACCAAGTTGCATAGAAGTCGACTAGTACAGGCTTTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTCTTCGCTTGAACCCGCAGCGTGGCGCCACGGCGGGACGGCGCGGCCGCCATGGAAT]

[-] EMBL AK062343             [AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACC CATATC TTGTTTGCTGGGATTTGAGGTAATTTAAAAAAG ACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCACACATGCTACTTTGCAACCTCCAAAGCACTCTCAATCTGTTGGATTAGTTGATTAGCAGGCAGCGCTCCCTCAAAGCGATGACAAGGTTTCCCATTCTTGAAGATAATAAAAGTTGGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTTACGACTTGAATCTTATCGCCTAACTTTTCGCTTACTTCCTGAAGTATAGGAACCATGTATTGACATGGACCACACCAAGTTGCATAGAAGTCGACTAGTACAGGCTTTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTCTTCGCTTGAACCCGCAGCGTGGCGCCACGGCGGGACGGCGCGGCCGCCATGGAAT]
[-] EMBL CB685835             [                CCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCACATATCATTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGAACAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_6753#2
AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAA
AGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACA
GAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAG
GTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTC
CACAAGAAAATTGGTAGCTTCCGCACACATGCTACTTTGCAACCTCCAAAGCACTCTCAA
TCTGTTGGATTAGTTGATTAGCAGGCAGCGCTCCCTCAAAGCGATGACAAGGTTTCCCAT
TCTTGAAGATAATAAAAGTTGGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGT
ACTTCTCTGTATCAATTTTTACGACTTGAATCTTATCGCCTAACTTTTCGCTTACTTCCT
GAAGTATAGGAACCATGTATTGACATGGACCACACCAAGTTGCATAGAAGTCGACTAGTA
CAGGCTTTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTCTTCGCTT
GAACCCGCAGCGTGGCGCCACGGCGGGACGGCGCGGCCGCCATGGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6753#0      -------AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAA 53
consensus_6753#2      AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAA 60
consensus_6753#1      -------------CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGC----GCCGCTC 43
                                      ***   *            *  *    ** * *    *   *  

consensus_6753#0      AGTATAATCAT-CAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCAC 112
consensus_6753#2      AGTATAATCAT-CAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCAC 119
consensus_6753#1      CGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGC 103
                       *      *   * * * **     *       *  *  *            *   ** *

consensus_6753#0      AGAAGATCAGCAAGCTGCATCTT-AGGTGTTTGCACCCATATCTT----GTTTGCTGGGA 167
consensus_6753#2      AGAAGATCAGCAAGCTGCATCTT-AGGTGTTTGCACCCATATCTT----GTTTGCTGGGA 174
consensus_6753#1      CGTGG--CGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGT 161
                       *  *  *  ** *****   ** * * *     **  *  *  *    *****  * * 

consensus_6753#0      TTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACT 227
consensus_6753#2      TTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACT 234
consensus_6753#1      TACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACT---------TGGT 212
                      *    *  ** *   ***** * * *  * *  **    *  *** *         *  *

consensus_6753#0      GTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGT 287
consensus_6753#2      GTTGTCCACAAGAAAATTGGTAGCTTCCGC--ACAC-----ATGCTACTTTGCAACC--T 285
consensus_6753#1      GTGGTCCATGTCAATACATGGTTCCTATACT-TCACG----AAGTAAGCGAAAAGTTAGG 267
                      ** *****    ** *   *   * *   *    **     *    *      *      

consensus_6753#0      ACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGC 347
consensus_6753#2      CCAAAGCACTCT------CAATCTGTTGGATTAGTTGATTAG--------CAGGCAGCGC 331
consensus_6753#1      CGATAAGATTCA--AGTCGTAAAAATTGATACAGAGAAGTACACAAGCA-TTGCTAATCG 324
                        * *  *  *         *    *      *    * **           *  *    

consensus_6753#0      ATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTG 407
consensus_6753#2      ----TCCCTCAAAGCGATGACAAGGTTTCCCATTCT-------TGAAGATAATAAAAGTT 380
consensus_6753#1      TTACCAAATTGAAGCATTGCCAACTTTTATTATCTT-------CAAGAATGGGAAACCTT 377
                                 ** *  ** * *  ***   *   *             *   *    * 

consensus_6753#0      AACACCTCATCTATAAGCTCATTATTGGCT-TGATGTCCCAAAACAAGTAATTAGATTAT 466
consensus_6753#2      GGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTT 440
consensus_6753#1      GTCATCGCTTTGA-GGGAGCGCTGCCTGCT--AATCAACTAATCCAACAGATTGAGAGTG 434
                        **   * *  *   *          **     *     *   *     **        

consensus_6753#0      ATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTG 526
consensus_6753#2      ACGACTTGAATCT-TATCGCCTAACTTTTCGC-TTAC-TTCCTGAAGTATAGGAACCATG 497
consensus_6753#1      CTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCT 494
                                     *    *     *                     *           

consensus_6753#0      GTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACC 586
consensus_6753#2      --TATTGACATG------GACCACACCAAGTTGCATAGAAGTCGACTAGTACAG---GCT 546
consensus_6753#1      GACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGG-----T 549
                          **   **        *    * *       *      *           *      

consensus_6753#0      ATGTAACATTCAGTCTAGAATAGTCAGG-AAAGAAAATCCAAATGGCATTTACTAATACC 645
consensus_6753#2      TTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTC-TTCGCTTGAACC 605
consensus_6753#1      GCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAG--TTCTTTCTGCC 607
                          *   ***         * ** *       *               *   *    **

consensus_6753#0      AGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTT---CAGTATTTCACA 701
consensus_6753#2      CGCAGCGTGGCGCCACGGCGG-------GACGGCGCGGCCGCCA---TGGAAT------ 648
consensus_6753#1      ATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT---- 662
                             *  * *               *         **           **