cluster # 6755

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Oryza sativa
cluster # 6755 cluster # 6755 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6755#0 length = 491 sequences # 1

consensus_6755#1 length = 393 sequences # 3

consensusID : consensus_6755#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAGGACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAACAAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGATTAAGTCGACTGCGGCGAGCCGTTGATGCTGAAGTCAGTGAGCACTGGTGGTGGGGCGAGT]

[+] EMBL CB682032             [AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAGGACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAACAAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGATTAAGTCGACTGCGGCGAGCCGTTGATGCTGAAGTCAGTGAGCACTGGTGGTGGGGCGAGT]




>consensus_6755#0
AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAG
GACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAAC
AAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACA
TCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTT
GGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTT
GACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACA
AAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTA
CTAGTCTTGATTAAGTCGACTGCGGCGAGCCGTTGATGCTGAAGTCAGTGAGCACTGGTG
GTGGGGCGAGT

consensusID : consensus_6755#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 393
fasta sequence

                              [TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTACTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGGCCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG]

[-] EMBL AT003673             [TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTACT                                                                                                          ]
[-] EMBL AT003486             [ TTTTTTTTTTTTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGGCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACACCCTTGATTCGACTGGGCTACTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGGCCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG]
[-] EMBL AT003524             [ TTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGA                                                                                                  ]




>consensus_6755#1
TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATC
CAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAG
AGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATT
TCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAA
AAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTACTAGTCTTGATCTGG
CGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGGCCTGTCACGGGGTGG
AGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6755#0      AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAG 60
consensus_6755#1      ------------------------------------------------------------
                                                                                  

consensus_6755#0      GACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAAC 120
consensus_6755#1      ------------------------------------------------------------
                                                                                  

consensus_6755#0      AAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACA 180
consensus_6755#1      ---------------TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACA 45
                                     * *  **  *  *** *****************************

consensus_6755#0      TCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTT 240
consensus_6755#1      TCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTT 105
                      ************************************************************

consensus_6755#0      GGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTT 300
consensus_6755#1      GGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTT 165
                      ************************************************************

consensus_6755#0      GACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACA 360
consensus_6755#1      GACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACA 225
                      ************************************************************

consensus_6755#0      AAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTA 420
consensus_6755#1      AAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTA 285
                      **************************************** *******************

consensus_6755#0      CTAGTCTTGATTAAGTC---GACTGCGGCGAGCCGTTGATGCTGAAGTCAGT-GAGC--A 474
consensus_6755#1      CTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGG 345
                      ***********   *      * * * **   ***  *   *     **  * ****   

consensus_6755#0      CTGGTGGTGGGGCGAGT------------------------------- 491
consensus_6755#1      CCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG 393
                      *  **   **** *