These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAGGACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAACAAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGATTAAGTCGACTGCGGCGAGCCGTTGATGCTGAAGTCAGTGAGCACTGGTGGTGGGGCGAGT] [+] EMBL CB682032 [AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAGGACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAACAAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGATTAAGTCGACTGCGGCGAGCCGTTGATGCTGAAGTCAGTGAGCACTGGTGGTGGGGCGAGT] consensusID : consensus_6755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 393 fasta sequence [TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTACTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGGCCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG] [-] EMBL AT003673 [TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTACT ] [-] EMBL AT003486 [ TTTTTTTTTTTTAGTACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGGCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACACCCTTGATTCGACTGGGCTACTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGGCCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG] [-] EMBL AT003524 [ TTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACATCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTTGGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTTGACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACAAAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTACTAGTCTTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6755#0 AAAAAAATTATATTCACTCAAGGACAGCATAAGATCCTACTAGAACACTACCCCACCTAG 60 consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GACTCCGATTAGCACATCATCATCATCATTATCCATGCACACCCAGATTAGCTCAAGAAC 120 consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 AAAGCTAGTAATCACTGTACTTAGTGGTAGTACTAATTGTCCCTGCATCATCCATTGACA 180 consensus_6755#1 ---------------TTTTTTTTTTTTTAGAACTAATTGTCCCTGCATCATCCATTGACA 45 * * ** * *** ***************************** consensus_6755#0 TCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTT 240 consensus_6755#1 TCTCTTCATCAGATCCAAAAAAAAAGGCCACATTTTTGTTTATGAATCTAATCTTTGCTT 105 ************************************************************ consensus_6755#0 GGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTT 300 consensus_6755#1 GGGCCTCACCATTAGAGCAAAAGCTAATTTGCTGCTGCTACTACTACTACTTGCTAGGTT 165 ************************************************************ consensus_6755#0 GACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACA 360 consensus_6755#1 GACTGATGAGTCATTTCATTAGCCATTAGGGTTGGTTAATTAGACAGGAAAAAGGCTACA 225 ************************************************************ consensus_6755#0 AAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAACCTTGATTCGACTGTGCTA 420 consensus_6755#1 AAAAAAGAGGAAAAAAAAAAGAAAAGAAAAGAAAGAGACAGCCTTGATTCGACTGTGCTA 285 **************************************** ******************* consensus_6755#0 CTAGTCTTGATTAAGTC---GACTGCGGCGAGCCGTTGATGCTGAAGTCAGT-GAGC--A 474 consensus_6755#1 CTAGTCTTGATCTGGCGCCGAATTTCTGCAGTCCGGGGGACCCACTATCTCTAGAGCCGG 345 *********** * * * * ** *** * * ** * **** consensus_6755#0 CTGGTGGTGGGGCGAGT------------------------------- 491 consensus_6755#1 CCTGTCACGGGGTGGAGCTCCCAGCTTTTCGTTCCCCTTTAGCCGAGG 393 * ** **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||