cluster # 6761

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Oryza sativa
cluster # 6761 cluster # 6761 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6761#0 length = 284 sequences # 3

consensus_6761#1 length = 284 sequences # 1

consensusID : consensus_6761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 284
fasta sequence

                              [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA]

[+] EMBL AT003624             [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAA ]
[+] EMBL AT003758             [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAA ]
[+] EMBL AT003623             [        ATCATGGCGTACGGATNAAGGGCAAGGGGCGCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA]




>consensus_6761#0
GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAG
TGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAA
CCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTT
GGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGG
CCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA

consensusID : consensus_6761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAGTGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAACCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTTGGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGGCCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA]

[+] EMBL AT003510             [GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAGTGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAACCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTTGGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGGCCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA]




>consensus_6761#1
GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAG
TGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAA
CCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTT
GGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGG
CCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6761#0      GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAG 60
consensus_6761#1      GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAG 60
                      ****** ******************************* ************* *******

consensus_6761#0      TGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAA 120
consensus_6761#1      TGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAA 120
                      ** ** **** *** ********* * ******* ******************** ****

consensus_6761#0      CCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTT 180
consensus_6761#1      CCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTT 180
                      ** *******   ***** * ****** *** *** ****** ****  ***** *****

consensus_6761#0      GGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGG 240
consensus_6761#1      GGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGG 240
                      **** * ***** ** ***************** *****  ****** * ***  *****

consensus_6761#0      CCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA 284
consensus_6761#1      CCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA 284
                      ********** * **************     ************