cluster # 6762

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Oryza sativa
cluster # 6762 cluster # 6762 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6762#0 length = 409 sequences # 1

consensus_6762#1 length = 402 sequences # 2
consensus_6762#2 length = 388 sequences # 1

consensusID : consensus_6762#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GGNTCCNNATTTGGGCCNAAGCTGGTANNGAATTNGGGCCGAGGAAAAGGTGTAGCGAACCCAGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAATTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCNCATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003576             [GGNTCCNNATTTGGGCCNAAGCTGGTANNGAATTNGGGCCGAGGAAAAGGTGTAGCGAACCCAGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAATTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCNCATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6762#0
GGNTCCNNATTTGGGCCNAAGCTGGTANNGAATTNGGGCCGAGGAAAAGGTGTAGCGAAC
CCAGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGC
TCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCT
TNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGNC
AAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAATTTA
GGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCNCATN
TTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6762#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 402
fasta sequence

                              [TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003741             [TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AT003549             [                     ATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6762#1
TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTG
TTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGC
AACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAG
CGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTAT
ATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTT
ATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAAC
ACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6762#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [TGGTGCCNAATTCGGCNCGAGGAAAAGGTGTGAGCGAACNCANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGTTAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTATGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAATTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCNCATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003519             [TGGTGCCNAATTCGGCNCGAGGAAAAGGTGTGAGCGAACNCANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGTTAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTATGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAATTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCNCATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6762#2
TGGTGCCNAATTCGGCNCGAGGAAAAGGTGTGAGCGAACNCANCTNTNTCGCGNGCATGG
GTGGATAATGNAGCGATTTTAANCTGTGTTGGGGTTAGCTNTTTGCAACGCATTTGGGNC
NCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGCGCNANAGCATGGT
GGATCGGAATCATGGGATCCGTCATNCCNCCCCTATGACAAGGTATATNTCCTGGCAAAA
TGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAATTTAGGNCTTTATAGGGAACGCTTN
CCTTGAAGGAACCCGGANCCNCGTAGCTATACCCNCATNTTCAANCCCCGNTGNTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6762#0      GGNTCCNNATTTGGGC-CNAAGCTGGTANNGAATTNGGGCC-GAGGAAAAGGTGT-AGCG 57
consensus_6762#1      -----------TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCG 49
consensus_6762#2      -----------------------TGGTGCCNAATTCGGCNC-GAGGAAAAGGTGTGAGCG 36
                                             ****    **** **    *********** * * **

consensus_6762#0      AACCC-AGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGT 116
consensus_6762#1      AACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGT 109
consensus_6762#2      AACNC-ANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGT 95
                      *** * *  * * * *** ******* ******** *********** ************

consensus_6762#0      TAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATT 176
consensus_6762#1      TAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATT 169
consensus_6762#2      TAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATT 155
                      ***** ***************** * **** *************** *************

consensus_6762#0      TGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTA 236
consensus_6762#1      TGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTA 229
consensus_6762#2      TGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTA 215
                      ***** ***** ** * ********************************* ** ******

consensus_6762#0      TGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAA 296
consensus_6762#1      TGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAA 289
consensus_6762#2      TGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAA 275
                      ** ********** ************** * ***** ****** ***** ****** ***

consensus_6762#0      TTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCN 356
consensus_6762#1      TTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCC 349
consensus_6762#2      TTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCN 335
                      ****** **** ************ ***************** ** ******* ***** 

consensus_6762#0      CATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 409
consensus_6762#1      CATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 402
consensus_6762#2      CATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 388
                      *** ***** * *** ** * ********************************