cluster # 6764

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6764 cluster # 6764 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6764#0 length = 528 sequences # 3

consensus_6764#1 length = 394 sequences # 1

consensusID : consensus_6764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 528
fasta sequence

                              [TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA]

[+] EMBL AT003730             [TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA]
[+] EMBL AT003695             [                                ATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA]
[+] EMBL AT003711             [                                                                                                                       TCCAAGACCCCAGCAGGCAAAGNCAGTGGAGGGACCCCCGCGGAACGTGCCGT GCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA]




>consensus_6764#0
TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGA
ACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGT
CCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGT
CAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCAT
GGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCT
TTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGC
AGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAAC
ACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGT
GGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA

consensusID : consensus_6764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAANCNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCATGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCCTTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCTGCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA]

[+] EMBL AT003627             [GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAANCNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCATGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCCTTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCTGCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA]




>consensus_6764#1
GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAANCNAATCACCNTCTGG
GNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCATGGCATCTANCTGCA
CCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCCTTTGGGACGAACCCA
GAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCTGCAGCGATATATTCG
CGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCNCGCTG
NTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAG
ATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6764#0      TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGA 60
consensus_6764#1      ------------------------------------------------------------
                                                                                  

consensus_6764#0      ACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGT 120
consensus_6764#1      ------------------------------------------------------------
                                                                                  

consensus_6764#0      CCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGT 180
consensus_6764#1      ---------------GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAAN 45
                                     ** ** **  ***  **  **** *******  **  **** *  

consensus_6764#0      CAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCAT-CCGCGGCCACTCA 239
consensus_6764#1      CNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCA 105
                      *  *** **  *** *  * ** ***  ** * *** ****** ** ***** ** ****

consensus_6764#0      TGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCC 299
consensus_6764#1      TGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCC 165
                      ********* ***** ************  *********** ************* ****

consensus_6764#0      TTTGGGACGA-CCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCT 358
consensus_6764#1      TTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCT 225
                      ********** ********************************* ***************

consensus_6764#0      GCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGA 418
consensus_6764#1      GCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGA 285
                      ******************* ****************************************

consensus_6764#0      ACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGT 478
consensus_6764#1      ACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGT 345
                      ********* ***** ******************** ***********************

consensus_6764#0      GTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA 528
consensus_6764#1      GTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA- 394
                      ******************************** ****************