cluster # 6769

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Oryza sativa
cluster # 6769 cluster # 6769 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6769#0 length = 675 sequences # 2

consensus_6769#1 length = 583 sequences # 1
consensus_6769#2 length = 530 sequences # 1

consensusID : consensus_6769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence

                              [CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCTGATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCGCTAGCTGCACAATTCTTCTTATCGGAATCCAAAAATGCAACCGGCGGGGTGGTGGACGAGGGGATGATCGAGCTGCGGCGGAGGATCCACGAGATGAGGGTGGCGGAGAGCGGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAGAAGGAGTGGTACGGGAGCTACGACGCCGACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGCCCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGAGCGTTCCGACCACCGCCTTCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107776             [CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCTGATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCGCTAGCTGCACAATTCTTCTTATCGGAATCCAAAAATGCAACCGGCGGGGTGGTGGACGAGGGGATGATCGAGCTGCGGCGGAGGATCCACGAGATGAGGGTGGCGGAGAGCGGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAGAAGGAGTGGTACGGGAGCTACGACGCCGACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGCCCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGAGCGTTCCGACCACCGCCTTCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAA                                                              ]
[+] EMBL CF314023             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6769#0
CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCT
GATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCGCTA
GCTGCACAATTCTTCTTATCGGAATCCAAAAATGCAACCGGCGGGGTGGTGGACGAGGGG
ATGATCGAGCTGCGGCGGAGGATCCACGAGATGAGGGTGGCGGAGAGCGGGTGGGAGCCG
CCGGCGGAGTGGGCGGCGTGGGAGAAGGAGTGGTACGGGAGCTACGACGCCGACGTGTGC
GCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGCCCCGGCGTCGGCGTCGGG
ATCGTGGCAGCGGTGGCGGTGAGCGTTCCGACCACCGCCTTCGTCCTCGTCTCCGGCCTC
CTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAAGCT
AACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAA
AAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAG
ATTGTCAAATTAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_6769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [CCGGCTTCGGCCTTCGGGTTCTTGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACTCCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTATTTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCACATAGCTACATTCTTTTGATAGCGTAATCTTAACTTATAATTCTGGTCCTCCAAAAAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGTACCCCTTCACCGAAAATCAGAGATNTAAACCATTTCTATTATTAAAAAA]

[+] EMBL BI806684             [CCGGCTTCGGCCTTCGGGTTCTTGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACTCCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTATTTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCACATAGCTACATTCTTTTGATAGCGTAATCTTAACTTATAATTCTGGTCCTCCAAAAAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGTACCCCTTCACCGAAAATCAGAGATNTAAACCATTTCTATTATTAAAAAA]




>consensus_6769#1
CCGGCTTCGGCCTTCGGGTTCTTGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTG
CGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTA
GAAGCTTAGCTTCCAACTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTA
ATTTAATTTTATCTAAAAAAACTAGTATATGTAATNTTTGATTTGATTATCGTTTCAATT
ACAGGAAAAGAAATATAGATTGTCAAATTAACATTTCGTCTACATGAATATTCCTTTGTA
TATGACAATTATGAATTACTCCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAA
TGCATTTTGACAAGTACTATTTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAA
AGTTAATATTGTTCAAGCACATAGCTACATTCTTTTGATAGCGTAATCTTAACTTATAAT
TCTGGTCCTCCAAAAAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGTACCCCT
TCACCGAAAATCAGAGATNTAAACCATTTCTATTATTAAAAAA

consensusID : consensus_6769#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [GACATTGAGAAACCGGCGGCGGTGAGGTNNCGNCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNANGGGATGATCTAGCTGCGGCGGAGGATCCNCCANATNAGGGCGGCGGANANCGGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAAAANNANTGGTACGGGAGCTACCACCCCCACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGCCCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGAGCGTTCCGACCNCCNCCTTCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANTANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCNCNTGNGTTCTTTNTAGTTTATANTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTNCAGGAAAAGAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003737             [GACATTGAGAAACCGGCGGCGGTGAGGTNNCGNCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNANGGGATGATCTAGCTGCGGCGGAGGATCCNCCANATNAGGGCGGCGGANANCGGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAAAANNANTGGTACGGGAGCTACCACCCCCACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGCCCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGAGCGTTCCGACCNCCNCCTTCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANTANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCNCNTGNGTTCTTTNTAGTTTATANTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTNCAGGAAAAGAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6769#2
GACATTGAGAAACCGGCGGCGGTGAGGTNNCGNCGGCGCGACAACCCGGATCAGTTNTTT
TCGGGCGNCGNCGGCGGCGGGGTGGTGGACNANGGGATGATCTAGCTGCGGCGGAGGATC
CNCCANATNAGGGCGGCGGANANCGGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAA
AANNANTGGTACGGGAGCTACCACCCCCACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCC
TTCCTCATNAGCTNCCGCCCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGAGC
GTTCCGACCNCCNCCTTCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTN
TCCAACCTCCAACANTANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCNCNTGNGT
TCTTTNTAGTTTATANTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGAT
TTGATTATCGTTTCAATTNCAGGAAAAGAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6769#0      CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCT 60
consensus_6769#2      ------------------------------------------------------------
consensus_6769#1      --------------------------------------CCGGCTTCGGCCTTCGGGTTCT 22
                                                                                  

consensus_6769#0      GATTCT---CTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCG 117
consensus_6769#2      --------------------------GACATTGAGAAACCGG--CGGCGGTGAGGTNNCG 32
consensus_6769#1      TGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTC 82
                                                **          *     *               

consensus_6769#0      CTAGCTGCACAATTCTTCTTATCGGAATCCAAA-AATGCAACCGGCGGGGTGGTGGACGA 176
consensus_6769#2      NCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNA 92
consensus_6769#1      CATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACC 142
                         **    **                  *            *   *         *   

consensus_6769#0      GGGGATGATCGAGCTGCGGCGG-----AGGATCCACGAGATGAGGGTGGC---GGAGAGC 228
consensus_6769#2      NGGGATGATCTAGCTGCGGCGG-----AGGATCCNCCANATNAGGGCGGC---GGANANC 144
consensus_6769#1      ATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAAC 202
                        ********   **   *        **  *   * *  * *            * * *

consensus_6769#0      GGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAG----AAGGAGTGGTACGGGAGCTA 284
consensus_6769#2      GGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAA----AANNANTGGTACGGGAGCTA 200
consensus_6769#1      TAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTG 262
                        **             *   **     ***   *     *   *  *  *       * 

consensus_6769#0      CGACGCCGACGTGT-GCGCGC-TGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGC 342
consensus_6769#2      CCACCCCCACGTGT-GCGCGC-TGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGC 258
consensus_6769#1      TCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACT-- 320
                        *     ** * * *    * **       *  ** *        * ** *  * *   

consensus_6769#0      CCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGA-GCGTTCCGACCACCGCC-T 400
consensus_6769#2      CCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGA-GCGTTCCGACCNCCNCC-T 316
consensus_6769#1      CCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTAT 380
                      **   * * *   **   **         * *   *   * ** **  ***     *  *

consensus_6769#0      TCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACT 460
consensus_6769#2      TCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANT 376
consensus_6769#1      TTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCAC 440
                      * ****  ** *   *        **   *            *    *   * ***    

consensus_6769#0      AGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACA-CTTGTGTTCTTTCTAGTTTATA 519
consensus_6769#2      ANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCN-CNTGNGTTCTTTNTAGTTTATA 435
consensus_6769#1      ATA-GCTACATTCTTTTGATAGC-----GTAATCTTAACTTATAATTCTGGTCCTCCAAA 494
                      * * * *    *     * ** *      * ***    * *    *  *  *  *  * *

consensus_6769#0      CTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCA 579
consensus_6769#2      NTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCA 495
consensus_6769#1      AAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGT---ACCCCTTCACCG----A 547
                        ** ***   ** *   * **    ** *  ***  ***   *     * * **    *

consensus_6769#0      ATTACAGGAAAAGAAATATAGATTGTCAAATTAAAAAAAAAAAAAAAAAAAAAAGAAAAA 639
consensus_6769#2      ATTNCAGGAAAAGAAA----------------AAAAAAAAAAAAAAAAAAA--------- 530
consensus_6769#1      AAATCAGAGATNTAAAC-----CATTTCTATTATTAAAAAA------------------- 583
                      *   ***  *   ***                *  ******                   

consensus_6769#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 675
consensus_6769#2      ------------------------------------
consensus_6769#1      ------------------------------------