cluster # 6778

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Oryza sativa
cluster # 6778 cluster # 6778 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6778#0 length = 358 sequences # 2

consensus_6778#1 length = 230 sequences # 2

consensusID : consensus_6778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 358
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCAAATCCCACCTCAATTCAAACCCCACGTCACATCCAAATCTCATATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTTTGTTTTGCTTGGGGTTGGGGTTGGGATTTGAATTA]

[+] EMBL AU223255             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCAAATCCCACCTCAATTCAAACCCCACGTCACATCCAAATCTCATATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTTTGTTTTGCTTGGGGTTGGGGTTGGGATTTGAATTA]
[-] EMBL AU029341             [                                                                                                             ttttTCATATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCGANCCTCCTTTGCTGGGACTCCTT                                   ]




>consensus_6778#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTAATTCAAATCCCACCTCAATTCAAACCCCACGTCACATCCAAATCTCATATC
ATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATC
CAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACA
TCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCG
AACCTCCTTTGCTGGGACTCCTTTGTTTTGCTTGGGGTTGGGGTTGGGATTTGAATTA

consensusID : consensus_6778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 230
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACANTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACANTGCTGTCG-TCGCCGTCGGCTCTCCGCCGNTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTT]

[-] EMBL C99416               [TTTTTTTTTTTTTTTTTTTTTTTTATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACANTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACANTGCTGTCG TCGCCGTCGGCTCTCCGCCGNTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTT]
[-] EMBL AU165839             [           TTTTTTTTTTTTTATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTANACTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACACTGCTGTCGTTCGCCGTCGGCTCTCCGNCGCTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTT]




>consensus_6778#1
TTTTTTTTTTTTTTTTTTTTTTTTATCATATCCAAATTTAAATTCACATCCAAAAATCAA
TCGATTTTACANTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAA
CATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACANTGCTGTCGTCGCC
GTCGGCTCTCCGCCGNTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6778#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_6778#1      ------------------------------------------------------------
                                                                                  

consensus_6778#0      TTTTTTTTAATTCAAATCCCACCTCAATTCAAACCCCACGTCACATCCAAATCTCATATC 120
consensus_6778#1      ---------------------------------TTTTTTTTTTTTTTTTTTTTTTTTATC 27
                                                              *    *     * *  ****

consensus_6778#0      ATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATC 180
consensus_6778#1      ATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACANTTCGTTTTCAACATC 87
                      ******************************************** ***************

consensus_6778#0      CAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACA 240
consensus_6778#1      CAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACA 147
                      ************************************************************

consensus_6778#0      TCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCG 300
consensus_6778#1      TCCAAACATTCATTTTACANTGCTGTCGTCGCCGTCGGCTCTCCGCCGNTGTCGCTGTCG 207
                      ******************* **************************** ***********

consensus_6778#0      AACCTCCTTTGCTGGGACTCCTTTGTTTTGCTTGGGGTTGGGGTTGGGATTTGAATTA 358
consensus_6778#1      AACCTCCTTTGCTGGGACTCCTT----------------------------------- 230
                      ***********************