cluster # 6781

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Oryza sativa
cluster # 6781 cluster # 6781 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6781#0 length = 439 sequences # 2

consensus_6781#1 length = 376 sequences # 2

consensusID : consensus_6781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence

                              [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAACCCCCTGCCTGTGAAATTTGG]

[+] EMBL AU029456             [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAA                     ]
[+] EMBL AK058993             [                                            ACGGGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACC AGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGACCCCCTGCCTGTGAAATTTGG]




>consensus_6781#0
GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCG
GGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTC
TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG
ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTT
TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG
AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC
CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAACC
CCCTGCCTGTGAAATTTGG

consensusID : consensus_6781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence

                              [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA]

[+] EMBL AU173044             [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA]
[+] EMBL AK100797             [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTG                                        ]




>consensus_6781#1
GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGC
CTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGA
GAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACAT
CTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTG
TGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTT
AGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAA
CTGAATGTGAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6781#0      GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCG 60
consensus_6781#1      -----------------------------------------------GGAGGGCTCATCG 13
                                                                     ********** **

consensus_6781#0      GGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTC 120
consensus_6781#1      GGGTCATGGGAGGGTTCATGTACGCCTACCA-GAACTCCGCCGGCCGCCTCATGGGCTTC 72
                      ******************************  ******** *******************

consensus_6781#0      TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 180
consensus_6781#1      TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 132
                      ************************************************************

consensus_6781#0      ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTT 240
consensus_6781#1      ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTT 192
                      ******************************** ********************** ****

consensus_6781#0      TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 300
consensus_6781#1      TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 252
                      ************************************************************

consensus_6781#0      AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 360
consensus_6781#1      AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 312
                      ************************************************************

consensus_6781#0      CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAA----AAA 416
consensus_6781#1      CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAA 372
                      *****************************************************    ***

consensus_6781#0      AACCCCCTGCCTGTGAAATTTGG 439
consensus_6781#1      AAAA------------------- 376
                      **