Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6786 cluster # 6786       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6786#0 length = 1069 sequences # 4  
consensusID : consensus_6786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1069
fasta sequence 
                              [AGATGAGATGAGAGATAAGTAGATGACACATTCACAGTTGCTATAGTTGTTGCTGCCACTGCCTATTAGCTAGCTTCCTCTCATTCGTAAGTGGCAG---CTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCCTCTCTCTACATCTACCCAAGAACACCTTCTCTCTCTCTAG------CTCTCTCTCTCTCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGCTGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTACTCGAGGATGATGTCCAAGGAGGCGGCGGCGGCGGCGGCGCCGCT-CGCCGTGCCGTCGTTCAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCAGCCCGGCACGCCCAAGAGCTCGCCCTCCACCGCCGTGCTCCCGCCGCTCACGCCGCCGCCCTCGTACTACGCCTCCGCCGGCAAGAAAGGCGGCGGCGGCGGCGCCTCGTCCGGCTCCAGGAGGAGCGGCTGGTCCGCCGGCGGCGCGCGCGGCGTCCTCGGCGCCATGTTCCGGCGGCCGTGGCGCCGGACGTCGCCGTGCTCCACCTCCTCCTCCTCGTCGTGGTCCTACTCCTCGCCGTCGTCCGTGTCGATGTCGCCGGTGTTCACCGTGCACCAGGCGTCCCCCATGGCGGTGGCGCGCTCCCACCACACGCGCGCGTGCTCCGCCGGCGCCGCCTACGACGACGCCGCCGCGGCGAGGTGCTTCGGCATGGAGCGCGAGTGCGAGAGGGGGCTCGTGAAAGGGTGCGGCGTCGCGGTGGCCGTCAGGAACGCGCTGTCGTCGGTCGTCGGCCACAAGTCCGGCGGCCACGGCGGCGCGCCGCCGGCGGCGGCGGCGGCGTATTAAATCCCTCCGCTGCACATGCACGCTGGCCGCTAGTATGTACTGCTATCTAATTTGCGTTTTTTCCGGGGTGTTCTTTGCATTTTGTACGCCATAGTACAAACATGTACGTACTTACTCTACGTGATAGTATGGAGGAGAAGT]

[+] EMBL AK109061             [AGATGAGATGAGAGATAAGTAGATGACACATTCACAGTTGCTATAGTTGTTGCTGCCACTGCCTATTAGCTAGCTTCCTCTCATTCGTAAGTGGCAG   CTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCCTCTCTCTACATCTACCCAAGAACACCTTCTCTCTCTCTAG      CTCTCTCTCTCTCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGCTGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTACTCGAGGATGATGTCCAAGGAGGCGGCGGCGGCGGCGGCGCCGCT CGCCGTGCCGTCGTTCAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCAGCCCGGCACGCCCAAGAGCTCGCCCTCCACCGCCGTGCTCCCGCCGCTCACGCCGCCGCCCTCGTACTACGCCTCCGCCGGCAAGAAAGGCGGCGGCGGCGGCGCCTCGTCCGGCTCCAGGAGGAGCGGCTGGTCCGCCGGCGGCGCGCGCGGCGTCCTCGGCGCCATGTTCCGGCGGCCGTGGCGCCGGACGTCGCCGTGCTCCACCTCCTCCTCCTCGTCGTGGTCCTACTCCTCGCCGTCGTCCGTGTCGATGTCGCCGGTGTTCACCGTGCACCAGGCGTCCCCCATGGCGGTGGCGCGCTCCCACCACACGCGCGCGTGCTCCGCCGGCGCCGCCTACGACGACGCCGCCGCGGCGAGGTGCTTCGGCATGGAGCGCGAGTGCGAGAGGGGGCTCGTGAAAGGGTGCGGCGTCGCGGTGGCCGTCAGGAACGCGCTGTCGTCGGTCGTCGGCCACAAGTCCGGCGGCCACGGCGGCGCGCCGCCGGCGGCGGCGGCGGCGTATTAAATCCCTCCGCTGCACATGCACGCTGGCCGCTAGTATGTACTGCTATCTAATTTGCGTTTTTTCCGGGGTGTTCTTTGCATTTTGTACGCCATAGTACAAACATGTACGTACTTACTCTACGTGATAGTATGGAGGAGAAGT]
[+] EMBL CA758395             [                                                                            CCTCTCATTCGTAAGTGGCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCCTCTCTCTACATCTACCCAAGAACACCTTCTCTCTCTCTAGCTCTCTCTCTCTCTCTCTCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGCTGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTACTCGAGGATGATGTCCAAGGAGGCGGCGGCGGCGGCGGCGCCGCT CGCCGTGCCGTCGTTCAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCAGCCCGGCACGCCCAAGAGCTCGCCCTCCACCGCCGTGCTCCCGCCGCTCACGCCGCCGCCCTCGTACTACGCCTCCGCCGGCAAGAAAGGCGGCGGCGGCGGCGCCTCGTCCGGCTCCAGGAGGAGCGGCTGGTCCGCCGGCGGCGCGCTCGGCGTCCTCGGCGCCATGTTCCGGCGGCCGTGGCGCCGGACGTCGCCGTGCTCCACCTCCTCCTCCTCGTCGTGGTCCTACTCCTCGCCGTCGTCCGTGT                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU068739             [                                                                                                                                                                 TCTCTCTCTCTAG      CTCTCTCTCTCTCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGCTGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTACTCGAGGATGATGTCCAAGGAGGNGGNGGCGGCGGCGGCGCCNTT CGCCGTGCCGTCGTTCAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCAGCCCGGNACGCCCAAGANCTCGCCCTCCAACGCCGTGCTCCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS3273A             [                                                                                                                                                                                             ccgCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGCTGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTACTCGAGGATGATGTCCAAGGAGGCGGCGGCGGCGGCGGCGCC CTCCGCCGTGNCGTCGTTCAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCANCCCGGCACGNCCAAGAGCTCGCCCTCCACCGCCGTGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_6786#0
AGATGAGATGAGAGATAAGTAGATGACACATTCACAGTTGCTATAGTTGTTGCTGCCACT
GCCTATTAGCTAGCTTCCTCTCATTCGTAAGTGGCAGCTTCTTCTTCTTCTTCTTCTTCT
TCTTCACTTCCTCTCTCTACATCTACCCAAGAACACCTTCTCTCTCTCTAGCTCTCTCTC
TCTCTCTAAGCTAGCCAAGAAGAGAGTGAAGAGCTAGCTTAGTGTGAGTGTGTTGGTGGC
TGCTATGGCGAGCACGAACGGCAAGGAGGAGGTGTATGTGAAGGAGGGGAGCAAGCTCTA
CTCGAGGATGATGTCCAAGGAGGCGGCGGCGGCGGCGGCGCCGCTCGCCGTGCCGTCGTT
CAGGGTGTACTACGGCGTCGCGTCGGCGGGATCCGTACCGTTCCTGTGGGAGTCGCAGCC
CGGCACGCCCAAGAGCTCGCCCTCCACCGCCGTGCTCCCGCCGCTCACGCCGCCGCCCTC
GTACTACGCCTCCGCCGGCAAGAAAGGCGGCGGCGGCGGCGCCTCGTCCGGCTCCAGGAG
GAGCGGCTGGTCCGCCGGCGGCGCGCGCGGCGTCCTCGGCGCCATGTTCCGGCGGCCGTG
GCGCCGGACGTCGCCGTGCTCCACCTCCTCCTCCTCGTCGTGGTCCTACTCCTCGCCGTC
GTCCGTGTCGATGTCGCCGGTGTTCACCGTGCACCAGGCGTCCCCCATGGCGGTGGCGCG
CTCCCACCACACGCGCGCGTGCTCCGCCGGCGCCGCCTACGACGACGCCGCCGCGGCGAG
GTGCTTCGGCATGGAGCGCGAGTGCGAGAGGGGGCTCGTGAAAGGGTGCGGCGTCGCGGT
GGCCGTCAGGAACGCGCTGTCGTCGGTCGTCGGCCACAAGTCCGGCGGCCACGGCGGCGC
GCCGCCGGCGGCGGCGGCGGCGTATTAAATCCCTCCGCTGCACATGCACGCTGGCCGCTA
GTATGTACTGCTATCTAATTTGCGTTTTTTCCGGGGTGTTCTTTGCATTTTGTACGCCAT
AGTACAAACATGTACGTACTTACTCTACGTGATAGTATGGAGGAGAAGT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)