These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence [CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC-GGCGCCG-GCGCCGCCG-GCCATGGC-GCCGCCGC-CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCACA] [+] EMBL AK064396 [CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC GGCGCCG GCGCCGCCG GCCATGGC GCCGCCGC CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCACA] [+] EMBL AK101602 [ CTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATGGTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGAGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGACGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGCGGCGGACGACGAGAAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAGCTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGACGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTGTCAAGTGGATCCTCGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTTCGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCTGCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCTGTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGC GGCGCCG GCGCCGCCG GCCATGGC GCCGCCGC CGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATGGAGCA ] [+] EMBL CB967090 [ TCTGCTCGGACTCCATCCGCCGGATGGAGCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCTCCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGCTGGCGCCGTGCGCCGCCGTGCCATGGCTGCCGCCGCGCGCCG ] consensusID : consensus_6789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [AGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTGATTGGATTGGGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGAGCTCTCTAANGAGAGAGAGCTTGAGTTACTTGAAGCCCAAANTTCAGNGCTCAAATGGAGCACAT] [+] EMBL CB096272 [AGTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGCTGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGCTGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTGATTGGATTGGGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGAGCTCTCTAANGAGAGAGAGCTTGAGTTACTTGAAGCCCAAANTTCAGNGCTCAAATGGAGCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6789#0 CTCGCTGCCCACTCTCCTCCTTCTCCGGCCGCCGCCGCCATCGCCGCCGGCCGTAGCATG 60 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GTTCTTGCTTGACTGACCTGAATAAACAGTAGGGGTGATGTCGATGGAGGAGGCGGAGGA 120 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GTGCTCGGCGGCGTGCGGCTTCTCGCTGACGTGCCAAGAAGACGGCGCCGACCTCGGCGA 180 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CGGCGTGGTCGACGACGACGACGACGGCGACGTATTCTTGTTCTACAATGCCGTTGCGGC 240 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GGCGGACGACGAGGAGGAGGAGGAGGAGTACGTGGAGCAGATGGTCTCCAAGGAGGCTAG 300 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CTTCTGCTGCTCCTCTTCTTCCTCCCTCTTCGACGCCGCCGCCGGCGACGGCTACGGCGA 360 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CGGCGACGGCGACGGGGACTGGTTCCGGCAAGCCCGCCTCGCCGCTATCAAGTGGATCCT 420 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CGAAACGAGGGGGTACTTCGGGTTCGGCCACCGGACGGCGTACCTCGCCATCGCCTACTT 480 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CGACCGCTTCTGCCTCCGGCGACGCGTCGATAGGGAGGCGATGCCGTGGGCGGCGCGGCT 540 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GCTGTCTATCGCGTGCGTGTCCGTGGCGGCGAAGATGGAGGAGTACCAGTCGCCGGCGCT 600 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GTCGGAGTTCGACGCCGGCGGCGGCCGCGTGTTCTGCTCGGACTCCATCCGCCGGATGGA 660 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GCTGCTCGTGCTGTCCACGCTGGGGTGGCGCATGGGCGCCGTCACGCCATTCGACTTCCT 720 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CCCCTGCTTCTCCTCCCGCCTCCACCGCCACCACCACGGCGGCGCCGGCGCCGCCGGCCA 780 consensus_6789#1 -----------------------------AGTGCT-CGGCGGCGT-GCGGCTTCTCGCTG 29 * * ******** * ** * ** consensus_6789#0 TGGCGCCGCCGCCGCCGCCCGCGTTGCCCTCAACGCCGTCGGCTTCACCTTTGCCACAGC 840 consensus_6789#1 ACGTGCCAA----GAAGACGGCGCCGACCTCAACGCCGTCGGCTTCATCTTTGCCACAGC 85 * *** * * * *** * ******************** ************ consensus_6789#0 TGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGC 900 consensus_6789#1 TGAAGCTGGAAGTGTGCTAGATTACAGGCCATCAACTGTTGCTGCAGCTGCAATCTTGGC 145 ************************************************************ consensus_6789#0 TGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTC 960 consensus_6789#1 TGCATCCTATGGAGCTCCACTGACAAAAGAAGCATTGGAGTCCAAGATGAGCAACCTTTC 205 ************************************************************ consensus_6789#0 TCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGA 1020 consensus_6789#1 TCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGA 265 ************************************************************ consensus_6789#0 CATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGAT 1080 consensus_6789#1 CATGAACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGAT 325 ************************************************************ consensus_6789#0 TACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTT 1140 consensus_6789#1 TACCACCACCAGTACATATGATTCTGTTCTTGTTGATGATGTTACCGACACCGCCGCCTT 385 ************************************************************ consensus_6789#0 CGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGCGAATCCGTTGAGGAAG 1200 consensus_6789#1 CGCTGCGACGGCGATGAATAAGCGGCTCAGGCCGGAGCCGCCGCGAATCCGTTGAGGAAG 445 ********************************* ************************** consensus_6789#0 CTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGAT 1260 consensus_6789#1 CTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGAT 505 ************************************************************ consensus_6789#0 CTTCTCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTA 1320 consensus_6789#1 CTTCTCCTTTTCTCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTA 565 ************ *********************************************** consensus_6789#0 TTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTG 1380 consensus_6789#1 TTAGGTTCTTTGAGCCATTGCCATTGGTTGGCATTTGGCAAATGNTGTTG-ATTGGATTG 624 ******************************************** ***** ********* consensus_6789#0 GTTT--GGTTTGTGAGAAGG-AGAAGAGATAATGAACAAAGGAAAAAAGGGGCTGAGTGA 1437 consensus_6789#1 GGTTTGGGTTTGTGAGAAGGGAGAAGAGATAATGAACAAGGAAAAAAGGGGCTTGAGTGA 684 * ** ************** ****************** * ***** *** ******* consensus_6789#0 GCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGCCCAAATG 1497 consensus_6789#1 GCTCTC-TAANGAGAG-AGAGCTTGAGTTACTTGAAGCCC-AAANTTCAGNGCTCAAATG 741 ****** *** ***** *********************** *** * *** ** ****** consensus_6789#0 GAGCACA- 1504 consensus_6789#1 GAGCACAT 749 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||