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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence
[CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC-GGAGGCACAAGGTGTGCCAGACGCAC-TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG]
[+] EMBL AU083475 [CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGGCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCGGTACAACC GGAGGCACAAGGTGTGCCAGACGCAC TCCAAGGAGCCCGTNGTCCTNCGTCGCTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTTCGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG]
[+] EMBL C91611 [ CACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGGGGCGGCGGTTCCTCCTCGTCCGCTGCTGTTGCTGCTGGCGCGTCTTCTAGCTCCTCCTNCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTNGCGCCCCGTCGGGCGNCGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGANCTCAGCGAGGCTGGGCGGTACAACCNGGA GCACAAGGTGTGCCAGACGTACTTCAAAGGAGCC ]
consensusID : consensus_6792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA]
[+] EMBL AU029544 [TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGCTCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACACAGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGGTTCCTCCTCGTCCGCNGCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTCGGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCGTCGGCGGCGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCGGTACAACGGAAGCACAAGGTGTGCAGANGCATTCCAAGGA]
consensusID : consensus_6792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT]
[+] EMBL AU064438 [CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGCTCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACACAGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNACCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCGTCGTCCTCCTCCTCGGCCGCGTCCATGGCCGCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6792#0 ----------------CCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 44
consensus_6792#1 TCCTCCTCCTCCTCCGCCTTCCACNTCCACNTCCACTCATGAGCTCGAGCTCGAGCNAGC 60
consensus_6792#2 -----CTCCTCCTCCGCCTTCCACTTCCACTTCCACTCATGAGCTCGAGCTCGAGCTAGC 55
******** ***** ************************* ***
consensus_6792#0 TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 104
consensus_6792#1 TCTAGCTCTCTCCACCCNCCTCCAGCCACCGCNTCCACNNCCCCTAGGAGGCTAGCACAC 120
consensus_6792#2 TCTAGCTCTCTCCACCCTCCTCCAGCCACCGCTTCCACCTCCCCTAGGAGGCTAGCACAC 115
***************** ************** ***** ********************
consensus_6792#0 AGCACACAGTAGCACTAGCTCGTCGTCGCTGGCGCCCGCGG-----------GGCGGCGG 153
consensus_6792#1 AGCACACAGNAGCACNAGCTCGTCGTCGCNGGCGCCCGTGGCAGGCGGCGGCGGCGGCGG 180
consensus_6792#2 AGCACACAGTAGCACTAGCTCGTCGTCGATCACGCGCGCNA------------------- 156
********* ***** ************ *** **
consensus_6792#0 TTCCTCCTCGTCCGCT--GCTGTTGCT-GCTGGCGCGTCTTCTAGCTCCTCCTCCTCCTC 210
consensus_6792#1 TTCCTCCTCGTCCGCN--GCTGTTGCNAGCTGGCGCGTCTTCNAGCTCCTCCTCCTCCTC 238
consensus_6792#2 CCGCCCATGGACCGCAAGGACAAGGCCCGCAAGAACTTCTCCTCG-TCGTCCTCCTCCTC 215
* * * * **** * ** ** * * *** * * ** ***********
consensus_6792#0 GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCCCGTCGGGCGG 270
consensus_6792#1 GGTGGCCGCGGCGGCGAGGAGGGGCGCGGGCCGTGCCGGCGGTGGCGCCC-GTCGG-CGG 296
consensus_6792#2 GGCCGCGTCCATGGCCGCGCT--------------------------------------- 236
** ** * *** *
consensus_6792#0 CGGCGGCGGGCCGAGGTGCCAGGTGGAGAGGTGCGGCGTCGACCTCAGCGAGGCTGGGCG 330
consensus_6792#1 CGGCGGCGGGNCGAGGTGCCAGGTGGAGAAGTGCGGCGTCGACATCAGCGAGGCTGGGCG 356
consensus_6792#2 ------------------------------------------------------------
consensus_6792#0 GTACAACCGGAGGCACAAGGTGTGCCAGACGCACTCCAAGGAGCCCGTNGTCCTNCGTCG 390
consensus_6792#1 GTACAAC-GGAAGCACAAGGTGTGC-AGANGCATTCCAAGGA------------------ 396
consensus_6792#2 ------------------------------------------------------------
consensus_6792#0 CTGGCCTCCGTCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCATGGGNTGACGGGAATTT 450
consensus_6792#1 ------------------------------------------------------------
consensus_6792#2 ------------------------------------------------------------
consensus_6792#0 CGNACGACGCGANGAGGAGCTGCCGGCGGCGGCTGG 486
consensus_6792#1 ------------------------------------
consensus_6792#2 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||