These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAGGGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAACAACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAACCAATTGGAGCTTCATCCTTCCTGCAAATTAGGCCCATTATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTTGAACCCTCGATAAACTCTGCAGCAACATCCCCACCTTGATAGGAAGCAGGCACAGCCCTAAAACCCAAAGGGCCCACCATGGCCACCTACTCTAAAAACGGGACCAAACCCCCCCGCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCGCCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCATTTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCTGCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA] [+] EMBL CA759014 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAGGGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAACAACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAACCAATTGGAGCTTCATCCTTCCTGCAAATTAGGCCCATTATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTTGAACCCTCGATAAACTCTGCAGCAACATCCCCACCTTGATAGGAAGCAGGCACAGCCCTAAAACCCAAAGGGCCCACCATGGCCACCTACTCTAAAAACGGGACCAAACCCCCCCGCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCGCCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCATTTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCTGCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA] consensusID : consensus_6796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAATGTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAAATTAGGTCCATTATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAAAAGGTCTCACCATGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCTGGCTGTAAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAACTTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGTTGCAGGTCTTGACAACCTGCCTGTGATGAAACCCTTTGT] [+] EMBL CA763363 [TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAATGTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAAATTAGGTCCATTATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAAAAGGTCTCACCATGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCTGGCTGTAAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAACTTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGTTGCAGGTCTTGACAACCTGCCTGTGATGAAACCCTTTGT] consensusID : consensus_6796#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAGATTAGGTCCATTATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTGGGCTGTAAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCTATTCAANTT] [-] EMBL AU029582 [TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGGCAAAAAACTAGGATAGATGAATCAATTGGAGCTTCATCCTTCCTGCAGATTAGGTCCATTATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTTGAACGCTCGATAAACTCTGCAGCAACATCACGACCTTGATAGGAAGCAAGCACAGTCCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCAGCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTGGGCTGTAAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCTATTCAANTT] consensusID : consensus_6796#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TTTTTTCACACTTCAGAAGATGCTATTATCAGCAAATATGCAAGAAAGCAAAATTTCAGCGCATGCTGAGAGCTACTGGCATGCAACTAATTTAGTAGTAGCACGCACAGCACTGAAAATATTCAGCGATGTTCTTGAAGAAAAAGGCGGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGT] [-] EMBL BM421610 [TTTTTTCACACTTCAGAAGATGCTATTATCAGCAAATATGCAAGAAAGCAAAATTTCAGCGCATGCTGAGAGCTACTGGCATGCAACTAATTTAGTAGTAGCACGCACAGCACTGAAAATATTCAGCGATGTTCTTGAAGAAAAAGGCGGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGTTTGAACGTTGATATTTAGCTAAATGTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6796#0 -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TTTTTTTTTAAAAAG 48 consensus_6796#2 ------------------------------------------------------------ consensus_6796#1 TTTTTTTTTTTTGAAAATATTCAGCGATGTTCTTGAAAAAAAAGGCGGTCAATCTAAAAT 60 consensus_6796#3 ------------------------------------------------------------ consensus_6796#0 GGCCAATCTTGCATCCTTGCACTACAAAAGGGGGGCTTGAACGCTGATATTTAGCTAAAG 108 consensus_6796#2 -----TTTTTTTTTTTTTTGTTTTTTTTTTGGTGGTTTGAACGTTGATATTTAGCTAAAT 55 consensus_6796#1 GTTCAATCTTGCATCCTTGCACTACAAAATGGTGGTTTGAACGTTGATATTTAGCTAAAT 120 consensus_6796#3 ------------------------TTTTTTCACACTTCAGAAGATGCTATT-ATCAGCAA 35 * * * ** **** * * * consensus_6796#0 GGTTGCAACCTAATCTGACAATACTACAGGGTATCATTTCAATTTTTCATCGCAGCCAAC 168 consensus_6796#2 GTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAAC 115 consensus_6796#1 GTTTGCAACCTAATCTGACAATACTACATGTTATCATTTCAATTTTTCATCGCAGTCAAC 180 consensus_6796#3 ATATGCAAGAAAG-----CAAAATTTCAGCGCATGCTGAGAGCTAC---TGGCATGCAAC 87 ***** * *** * * ** ** * * * * *** **** consensus_6796#0 AACCTGACTTGAGGGGCTTGGAACAGGCTAAAAACGCCCTTCCCAAAAAAAAA-TAAAGG 227 consensus_6796#2 AACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCGAAAAAAAAAATAAAGG 175 consensus_6796#1 AACTTGACTTGAGGTGCTTGGAACAGGCTAAATACGTCCTTCCAAAAAAAAAAATAAAGG 240 consensus_6796#3 TAATTTAGTAGTAGCACGCACAGCA--CTGAAAATATTC-----AGCGATGTTCTTGAAG 140 * * * * * * * * ** ** ** * * * * * * * consensus_6796#0 CAAAAAACTAGGATAGATGAACCAATTGGAGCTT-CATCCTTCCTGCAAATTAGGCCCAT 286 consensus_6796#2 CAAAAAACTAGGATAGATGAATCAATTGGAGCTT-CATCCTTCCTGCAGATTAGGTCCAT 234 consensus_6796#1 CAAAAAACTAGGATAGATGAATCAATTGGAGCTT-CATCCTTCCTGCAAATTAGGTCCAT 299 consensus_6796#3 AAAAAGGC--GGTCAATCTAAGATGTTCAATCTTGCATCCTTGCACTACAAAAGGGTGGT 198 **** * ** * ** ** * *** ******* * * * *** * consensus_6796#0 TATCGGCTCCATATACCCCCATGTTGTTTTTGCCCTTGCAAACCCCCCTGGGGTCCCTTT 346 consensus_6796#2 TATTGTCTCCATATACGCCCATGTTGTTTTTGCTCTTGCATACGCCTCTGGNGTTCCTTT 294 consensus_6796#1 TATCGTCTCCATATACCCCCATGTTGTTTTTGCTCTTGCATACCCCTCTGGTGTTCCTTT 359 consensus_6796#3 TTGAACGTTGATAT---------TTAGCTAAATGTTTGCAACCTAATCTGACAATACTAC 249 * * **** ** * ***** * *** ** consensus_6796#0 GAACCCTCGATA-AACTCTGCAGCAACATCCCCACCTTGATAGGAAGCA---GGCACAGC 402 consensus_6796#2 GAACGCTCGATA-AACTCTGCAGCAACATCACGACCTTGATAGGAAGCA---AGCACAGT 350 consensus_6796#1 GAACGCTCGATA-AACTCTGCAGCAACATCACGACCTTGATAGGAAGCA---AGCACAGT 415 consensus_6796#3 ATGTTATCATTTCAATTTTTCATCGCAGTCAACAACTTGACTTGAGGTGCTTGGAACAGG 309 ** * ** * * ** * ** * ***** ** * * **** consensus_6796#0 CCTAAAACCCAAAGGGCCCACCATGGCCACC-TACTCTAAAAACGGGACCAAACCCCCCC 461 consensus_6796#2 CCTAATATCAGAAGGNCTCACCATGGGCAACATACTCTAGAAATGGGATCAGATCCAGCA 410 consensus_6796#1 CCTAATATCAAAAGGTCTCACCATGG-CAACATACTCTAGAAATGGGATCAGATCCAGCA 474 consensus_6796#3 CTAAATACGT-------------------------------------------------- 319 * ** * consensus_6796#0 GCTGGGGGGCACCAGTTTCAAGGTTCCAAGGTTTGATTTAAACACCACTTCCCCGGCTCG 521 consensus_6796#2 GCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAANACAATTTCTG-GGCTGT 469 consensus_6796#1 GCTGGGTGTCATCAGTTTCAAGTTTCCAAGGTTTGATTTGAACACAATTTTCT-GGCTGT 533 consensus_6796#3 ------------------------------------------------------------ consensus_6796#0 CCGCAACACTCCAGAGCCGGGCCCCTGATCCAAACAATCCCGGCGCGATTCCCATCCCAT 581 consensus_6796#2 AAGCAAGATTCAAGAGCGTGGNTGCTGATGTAAATAACTTGTGCAGGATTCT-ATTCAAN 528 consensus_6796#1 AAGCAAGATTCAAGAGCGTGGCCACTGATGTAAATAACTTGTGCAGGATTTCTATTCAAC 593 consensus_6796#3 ------------------------------------------------------------ consensus_6796#0 TTGGACAACACCCCCACAGGGTCCCCACCCCGCAACTCAACCTCCAGGCCCCGGACCCCT 641 consensus_6796#2 TT---------------------------------------------------------- 530 consensus_6796#1 TTTGACAAATCCCGATAATGTTTACCATCTTGATACTTAGT-TGCAGGTCTTGACAACCT 652 consensus_6796#3 ------------------------------------------------------------ consensus_6796#0 GCCCGGCGAGGAACCCCCTGCGCTCGGCCCCAACAAGCTTAACGA 686 consensus_6796#2 --------------------------------------------- consensus_6796#1 GCCTGTGATGAAACCCTTTGT------------------------ 673 consensus_6796#3 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||